Mercurial > repos > testtool > get_gr_set

view getGRsetFromGEO/getGRsetFromGEO.R @ 4:86777f72f33c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Sun, 11 Jun 2017 06:38:17 -0400
parents 457c1fc71f64
children
line wrap: on
line source

require("minfi", quietly = TRUE)

options(warn = -1)
options("download.file.method"="wget")

args <- commandArgs(trailingOnly = TRUE)
GSE = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(GSE)

save(GRset,file = output)