# HG changeset patch
# User testtool
# Date 1499691491 14400
# Node ID 1bdfe0d48de89e925d49c74435b9cf973690ffa1
# Parent  71a8c9b37d45bc6436f818448741ba20608369c3
Uploaded

diff -r 71a8c9b37d45 -r 1bdfe0d48de8 GRsetFromGEO.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO.xml	Mon Jul 10 08:58:11 2017 -0400
@@ -0,0 +1,18 @@
+<tool id="getGRset" name="GRsetFromGEO">
+  <description>downloads data from GEO</description>
+  <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command>
+  <inputs>
+    <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
+  </inputs>
+  <outputs>
+    <data format="RDdata" name="output" label="output.RData" />
+  </outputs>
+  <help>
+    **What it does**
+    This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object
+    **Input**
+    The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'"
+    **Output**
+    GenomicRatioSet object
+  </help>
+</tool>