Mercurial > repos > testtool > get_gr_set
changeset 63:ddd126dbb19a draft default tip
Uploaded
| author | testtool |
|---|---|
| date | Thu, 11 Jan 2018 12:58:58 -0500 |
| parents | 8673a0225e2b |
| children | |
| files | GRsetFromGEO/.Rapp.history GRsetFromGEO/.Rhistory GRsetFromGEO/._.DS_Store GRsetFromGEO/._GRsetFromGEO.xml GRsetFromGEO/._~$setFromGEO.xml GRsetFromGEO/~$setFromGEO.xml |
| diffstat | 5 files changed, 16 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GRsetFromGEO/.Rhistory Thu Jan 11 12:58:58 2018 -0500 @@ -0,0 +1,16 @@ +require("minfi", quietly = TRUE) +?require +require("minfi", quietly = TRUE) +minfi +as.data.frame(GRset) +GRset <- getGenomicRatioSetFromGEO(GSE) +getGenomicRatioSetFromGEO +require("minfi", quietly = TRUE) +options(warn = -1) +options("download.file.method"="wget") +args <- commandArgs(trailingOnly = TRUE) +GSE = args[1] +output = args[2] +GRset <- getGenomicRatioSetFromGEO(GSE) +save(GRset,file = output) +sessionInfo()