Mercurial > repos > testtool > get_gsm
comparison getGSMdata/getGSMdata.xml @ 21:4cb6d25a2234 draft
Uploaded
| author | testtool |
|---|---|
| date | Mon, 06 Feb 2017 10:15:34 -0500 |
| parents | a16c8aca54ed |
| children | 996added1f38 |
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| 20:a16c8aca54ed | 21:4cb6d25a2234 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 1 <tool id="GSM" name="getGSMdata" version="1.16.2"> | 2 <tool id="GSM" name="getGSMdata" version="1.16.2"> |
| 2 <requirements> | 3 <requirements> |
| 3 <requirement type="package" version="3.2.1">R</requirement> | 4 <requirement type="package" version="3.2.1">R</requirement> |
| 4 </requirements> | 5 </requirements> |
| 5 <stdio> | 6 <stdio> |
| 6 <exit_code range="1:" /> | 7 <exit_code range="1:" /> |
| 7 </stdio> | 8 </stdio> |
| 8 <description>from GEO</description> | |
| 9 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command> | 9 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command> |
| 10 <inputs> | 10 <inputs> |
| 11 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> | 11 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> |
| 12 </inputs> | 12 </inputs> |
| 13 <outputs> | 13 <outputs> |
| 23 </element> | 23 </element> |
| 24 </param> | 24 </param> |
| 25 <output format="txt" name="GSMTable" label="test-data/GSMTable.txt"/> | 25 <output format="txt" name="GSMTable" label="test-data/GSMTable.txt"/> |
| 26 </test> | 26 </test> |
| 27 </tests> | 27 </tests> |
| 28 <help> | 28 <description>from GEO</description> |
| 29 **Description** | |
| 30 </help> | |
| 31 <citations> | 29 <citations> |
| 32 GEO | 30 GEO |
| 33 </citations> | 31 </citations> |
| 34 </tool> | 32 </tool> |