Mercurial > repos > testtool > get_gsm
comparison getGSMdata/getGSMdata.xml @ 20:a16c8aca54ed draft
Uploaded
| author | testtool |
|---|---|
| date | Mon, 06 Feb 2017 10:12:07 -0500 |
| parents | 28717b0d370e |
| children | 4cb6d25a2234 |
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| 19:28717b0d370e | 20:a16c8aca54ed |
|---|---|
| 1 <tool id="GSM" name="getGSMdata" version="1.16.2"> | 1 <tool id="GSM" name="getGSMdata" version="1.16.2"> |
| 2 <description>from GEO</description> | |
| 3 <requirements> | 2 <requirements> |
| 4 <requirement type="package" version="3.2.1">R</requirement> | 3 <requirement type="package" version="3.2.1">R</requirement> |
| 5 </requirements> | 4 </requirements> |
| 6 <stdio> | 5 <stdio> |
| 7 <exit_code range="1:" /> | 6 <exit_code range="1:" /> |
| 8 </stdio> | 7 </stdio> |
| 8 <description>from GEO</description> | |
| 9 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command> | 9 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command> |
| 10 <inputs> | 10 <inputs> |
| 11 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> | 11 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> |
| 12 </inputs> | 12 </inputs> |
| 13 <outputs> | 13 <outputs> |