diff getGSMdata/getGSMdata.xml @ 8:5e1d49abfc99 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getGSMdata/getGSMdata.xml	Mon Feb 06 05:17:56 2017 -0500
@@ -0,0 +1,37 @@
+<tool id="GSM" name="getGSMdata" version="1.16.2">
+  <requirements>
+<tool_dependency>
+    <package name="methyldata_1_16_2" version="1.16.2">
+        <repository name="methyldata_1_16_2" owner="testtool" prior_installation_required="True" />
+    </package>
+</tool_dependency>
+</requirements>
+<stdio>
+   <exit_code range="1:" />
+</stdio>
+  <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command>
+  <inputs>
+     <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="GSMTable" label="GSMTable.txt"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="test">
+      <element name="test-data">
+          <collection type="data">
+                <element name="GSE" value="GSE51547"/>
+          </collection>
+        </element>
+        </param>
+        <output format="txt"  name="GSMTable" label="test-data/GSMTable.txt"/>
+        </test>
+    </tests>
+  <help>
+**Description**
+</help>
+<citations>
+GEO
+</citations>
+</tool>