view getGSMdata/getGSMdata.xml @ 9:a376481b54b8 draft

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<tool id="GSM" name="getGSMdata" version="1.16.2">
  <requirements>
    <tool_dependency>
      <package name="R" version="3.2.1">
          <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
      </package>
    </tool_dependency>
</requirements>
<stdio>
   <exit_code range="1:" />
</stdio>
  <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command>
  <inputs>
     <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
  </inputs>
  <outputs>
    <data format="txt" name="GSMTable" label="GSMTable.txt"/>
  </outputs>
  <tests>
    <test>
      <param name="test">
      <element name="test-data">
          <collection type="data">
                <element name="GSE" value="GSE51547"/>
          </collection>
        </element>
        </param>
        <output format="txt"  name="GSMTable" label="test-data/GSMTable.txt"/>
        </test>
    </tests>
  <help>
**Description**
</help>
<citations>
GEO
</citations>
</tool>