Mercurial > repos > testtool > get_gsm

changeset 2:7c896d0c6119 draft

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Uploaded
author testtool
date Mon, 06 Feb 2017 05:07:31 -0500
parents fa6401d7a7a2
children c90a3ff42982
files getGSMdata.xml
diffstat 1 files changed, 37 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getGSMdata.xml	Mon Feb 06 05:07:31 2017 -0500
@@ -0,0 +1,37 @@
+<tool id="GSM" name="getGSMdata" version="1.16.2">
+  <requirements>
+<tool_dependency>
+    <package name="methyldata_1_16_2" version="1.16.2">
+        <repository name="methyldata_1_16_2" owner="testtool" prior_installation_required="True" />
+    </package>
+</tool_dependency>
+</requirements>
+<stdio>
+   <exit_code range="1:" />
+</stdio>
+  <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command>
+  <inputs>
+     <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="GSMTable" label="GSMTable.txt"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="test">
+      <element name="test-data">
+          <collection type="data">
+                <element name="GSE" value="GSE51547"/>
+          </collection>
+        </element>
+        </param>
+        <output format="txt"  name="GSMTable" label="test-data/GSMTable.txt"/>
+        </test>
+    </tests>
+  <help>
+**Description**
+</help>
+<citations>
+GEO
+</citations>
+</tool>