Mercurial > repos > testtool > survival
comparison survival/survival.xml @ 0:6cc0c5eb71b2 draft
Uploaded
author | testtool |
---|---|
date | Fri, 29 Sep 2017 18:11:27 -0400 |
parents | |
children | e31c47bf46a4 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:6cc0c5eb71b2 |
---|---|
1 <tool id="survival" name="survival" version="1.0.0"> | |
2 <description>core survival analysis</description> | |
3 <requirements> | |
4 <requirement type="package" version="2.40_1">r-survival</requirement> | |
5 </requirements> | |
6 <command detect_errors="aggressive"> | |
7 Rscript '$__tool_directory__/survival.R' '$input' '$fit' '$png' | |
8 </command> | |
9 <inputs> | |
10 <param format="csv" type="data" name="input" value="" label="survival data" help="e.g. ''"/> | |
11 </inputs> | |
12 <outputs> | |
13 <data format="csv" name="fit" label="survfit.csv" /> | |
14 <data format="png" name="png" label="survfit.png" /> | |
15 </outputs> | |
16 <tests> | |
17 <test> | |
18 <param name="test"> | |
19 <element name="test-data"> | |
20 <collection type="data"> | |
21 <element format="csv" name="input" label="test-data/input.csv"/> | |
22 </collection> | |
23 </element> | |
24 </param> | |
25 <output format="csv" name="fit" label="test-data/survfit.csv"/> | |
26 <output fformat="png" name="png" label="test-data/survfit.png"/> | |
27 </test> | |
28 </tests> | |
29 <help> | |
30 **Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier** | |
31 </help> | |
32 <citations> | |
33 <citation>https://CRAN.R-project.org/package=survival</citation> | |
34 </citations> | |
35 </tool> |