comparison survival/survival.xml @ 0:6cc0c5eb71b2 draft

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author testtool
date Fri, 29 Sep 2017 18:11:27 -0400
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1 <tool id="survival" name="survival" version="1.0.0">
2 <description>core survival analysis</description>
3 <requirements>
4 <requirement type="package" version="2.40_1">r-survival</requirement>
5 </requirements>
6 <command detect_errors="aggressive">
7 Rscript '$__tool_directory__/survival.R' '$input' '$fit' '$png'
8 </command>
9 <inputs>
10 <param format="csv" type="data" name="input" value="" label="survival data" help="e.g. ''"/>
11 </inputs>
12 <outputs>
13 <data format="csv" name="fit" label="survfit.csv" />
14 <data format="png" name="png" label="survfit.png" />
15 </outputs>
16 <tests>
17 <test>
18 <param name="test">
19 <element name="test-data">
20 <collection type="data">
21 <element format="csv" name="input" label="test-data/input.csv"/>
22 </collection>
23 </element>
24 </param>
25 <output format="csv" name="fit" label="test-data/survfit.csv"/>
26 <output fformat="png" name="png" label="test-data/survfit.png"/>
27 </test>
28 </tests>
29 <help>
30 **Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier**
31 </help>
32 <citations>
33 <citation>https://CRAN.R-project.org/package=survival</citation>
34 </citations>
35 </tool>