Mercurial > repos > testtool > survival
diff survival/survival.xml @ 0:6cc0c5eb71b2 draft
Uploaded
author | testtool |
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date | Fri, 29 Sep 2017 18:11:27 -0400 |
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children | e31c47bf46a4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/survival/survival.xml Fri Sep 29 18:11:27 2017 -0400 @@ -0,0 +1,35 @@ +<tool id="survival" name="survival" version="1.0.0"> + <description>core survival analysis</description> + <requirements> + <requirement type="package" version="2.40_1">r-survival</requirement> + </requirements> + <command detect_errors="aggressive"> + Rscript '$__tool_directory__/survival.R' '$input' '$fit' '$png' + </command> +<inputs> + <param format="csv" type="data" name="input" value="" label="survival data" help="e.g. ''"/> + </inputs> + <outputs> + <data format="csv" name="fit" label="survfit.csv" /> + <data format="png" name="png" label="survfit.png" /> + </outputs> + <tests> + <test> + <param name="test"> + <element name="test-data"> + <collection type="data"> + <element format="csv" name="input" label="test-data/input.csv"/> + </collection> + </element> + </param> + <output format="csv" name="fit" label="test-data/survfit.csv"/> + <output fformat="png" name="png" label="test-data/survfit.png"/> + </test> + </tests> + <help> +**Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier** +</help> +<citations> + <citation>https://CRAN.R-project.org/package=survival</citation> +</citations> +</tool>