Mercurial > repos > testtool > survival
view survival/survival.xml @ 2:ce6df2bd21cd draft
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author | testtool |
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date | Fri, 29 Sep 2017 18:41:35 -0400 |
parents | 6cc0c5eb71b2 |
children | e31c47bf46a4 |
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<tool id="survival" name="survival" version="1.0.0"> <description>core survival analysis</description> <requirements> <requirement type="package" version="2.40_1">r-survival</requirement> </requirements> <command detect_errors="aggressive"> Rscript '$__tool_directory__/survival.R' '$input' '$fit' '$png' </command> <inputs> <param format="csv" type="data" name="input" value="" label="survival data" help="e.g. ''"/> </inputs> <outputs> <data format="csv" name="fit" label="survfit.csv" /> <data format="png" name="png" label="survfit.png" /> </outputs> <tests> <test> <param name="test"> <element name="test-data"> <collection type="data"> <element format="csv" name="input" label="test-data/input.csv"/> </collection> </element> </param> <output format="csv" name="fit" label="test-data/survfit.csv"/> <output fformat="png" name="png" label="test-data/survfit.png"/> </test> </tests> <help> **Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier** </help> <citations> <citation>https://CRAN.R-project.org/package=survival</citation> </citations> </tool>