annotate test-data/TEST_2/TEST_2.json @ 2:4ad5b5443b6b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty

{
    "genome": {
        "genus": "Escherichia",
        "species": "coli o157:h7",
        "strain": "Sakai",
        "plasmid": "pOSAK1",
        "complete": true,
        "gram": "?",
        "translation_table": 11
    },
    "stats": {
        "no_sequences": 1,
        "size": 1330,
        "gc": 0.4518796992481203,
        "n_ratio": 0.0,
        "n50": 1330,
        "coding_ratio": 0.6203007518796992
    },
    "features": [
        {
            "type": "cds",
            "contig": "NC_002127.1",
            "start": 413,
            "stop": 736,
            "strand": "+",
            "gene": null,
            "product": "hypothetical protein",
            "start_type": "ATG",
            "rbs_motif": "GGAG/GAGG",
            "db_xrefs": [],
            "frame": 2,
            "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
            "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e",
            "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG",
            "hypothetical": true,
            "seq_stats": {
                "molecular_weight": 12072.90819999999,
                "isoelectric_point": 10.367886161804197
            },
            "id": "IHHALPPJCH_1",
            "locus": "IHHALP_00005"
        },
        {
            "type": "cds",
            "contig": "NC_002127.1",
            "start": 971,
            "stop": 141,
            "strand": "-",
            "gene": null,
            "product": "hypothetical protein",
            "start_type": "ATG",
            "rbs_motif": "AGGA/GGAG/GAGG",
            "db_xrefs": [],
            "frame": 1,
            "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI",
            "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584",
            "edge": true,
            "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA",
            "hypothetical": true,
            "seq_stats": {
                "molecular_weight": 18866.325799999995,
                "isoelectric_point": 7.696590614318848
            },
            "id": "IHHALPPJCH_2",
            "locus": "IHHALP_00010"
        }
    ],
    "sequences": [
        {
            "id": "NC_002127.1",
            "description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence",
            "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG",
            "length": 1330,
            "complete": true,
            "type": "plasmid",
            "topology": "circular",
            "simple_id": "contig_1",
            "name": "pOSAK1"
        }
    ],
    "run": {
        "start": "2022-09-16 07:32:09",
        "end": "2022-09-16 07:32:10"
    },
    "version": {
        "bakta": "1.5.0",
        "db": "4.0"
    }
}