Mercurial > repos > thanhlv > bakta
comparison test-data/TEST_2/TEST_2.log @ 0:54ca20519f70 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
| author | thanhlv |
|---|---|
| date | Fri, 28 Apr 2023 17:18:48 +0000 |
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| -1:000000000000 | 0:54ca20519f70 |
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| 1 parse genome sequences... | |
| 2 imported: 1 | |
| 3 filtered & revised: 1 | |
| 4 plasmids: 1 | |
| 5 | |
| 6 start annotation... | |
| 7 skip tRNA prediction... | |
| 8 skip tmRNA prediction... | |
| 9 predict rRNAs... | |
| 10 found: 0 | |
| 11 predict ncRNAs... | |
| 12 found: 0 | |
| 13 predict ncRNA regions... | |
| 14 found: 0 | |
| 15 predict CRISPR arrays... | |
| 16 found: 0 | |
| 17 predict & annotate CDSs... | |
| 18 predicted: 2 | |
| 19 discarded spurious: 0 | |
| 20 revised translational exceptions: 0 | |
| 21 detected IPSs: 0 | |
| 22 found PSCs: 0 | |
| 23 found PSCCs: 0 | |
| 24 lookup annotations... | |
| 25 conduct expert systems... | |
| 26 amrfinder: 0 | |
| 27 protein sequences: 0 | |
| 28 combine annotations and mark hypotheticals... | |
| 29 detect pseudogenes... | |
| 30 pseudogene candidates: 0 | |
| 31 found pseudogenes: 0 | |
| 32 analyze hypothetical proteins: 2 | |
| 33 detected Pfam hits: 0 | |
| 34 calculated proteins statistics | |
| 35 revise special cases... | |
| 36 extract sORF... | |
| 37 potential: 22 | |
| 38 discarded due to overlaps: 2 | |
| 39 discarded spurious: 0 | |
| 40 detected IPSs: 0 | |
| 41 found PSCs: 0 | |
| 42 lookup annotations... | |
| 43 filter and combine annotations... | |
| 44 filtered sORFs: 0 | |
| 45 detect gaps... | |
| 46 found: 0 | |
| 47 detect oriCs/oriVs... | |
| 48 found: 0 | |
| 49 detect oriTs... | |
| 50 found: 0 | |
| 51 apply feature overlap filters... | |
| 52 select features and create locus tags... | |
| 53 selected: 2 | |
| 54 | |
| 55 genome statistics: | |
| 56 Genome size: 1,330 bp | |
| 57 Contigs/replicons: 1 | |
| 58 GC: 45.2 % | |
| 59 N50: 1,330 | |
| 60 N ratio: 0.0 % | |
| 61 coding density: 62.0 % | |
| 62 | |
| 63 annotation summary: | |
| 64 tRNAs: 0 | |
| 65 tmRNAs: 0 | |
| 66 rRNAs: 0 | |
| 67 ncRNAs: 0 | |
| 68 ncRNA regions: 0 | |
| 69 CRISPR arrays: 0 | |
| 70 CDSs: 2 | |
| 71 hypotheticals: 2 | |
| 72 pseudogenes: 0 | |
| 73 signal peptides: 0 | |
| 74 sORFs: 0 | |
| 75 gaps: 0 | |
| 76 oriCs/oriVs: 0 | |
| 77 oriTs: 0 | |
| 78 | |
| 79 export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/4/working | |
| 80 human readable TSV... | |
| 81 GFF3... | |
| 82 INSDC GenBank & EMBL... | |
| 83 genome sequences... | |
| 84 feature nucleotide sequences... | |
| 85 translated CDS sequences... | |
| 86 circular genome plot... | |
| 87 hypothetical TSV... | |
| 88 translated hypothetical CDS sequences... | |
| 89 machine readable JSON... | |
| 90 genome and annotation summary... | |
| 91 | |
| 92 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 | |
| 93 Annotation successfully finished in 0:00 [mm:ss]. |