Mercurial > repos > thanhlv > bakta
comparison test-data/TEST_2/TEST_2.log @ 0:54ca20519f70 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
author | thanhlv |
---|---|
date | Fri, 28 Apr 2023 17:18:48 +0000 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:54ca20519f70 |
---|---|
1 parse genome sequences... | |
2 imported: 1 | |
3 filtered & revised: 1 | |
4 plasmids: 1 | |
5 | |
6 start annotation... | |
7 skip tRNA prediction... | |
8 skip tmRNA prediction... | |
9 predict rRNAs... | |
10 found: 0 | |
11 predict ncRNAs... | |
12 found: 0 | |
13 predict ncRNA regions... | |
14 found: 0 | |
15 predict CRISPR arrays... | |
16 found: 0 | |
17 predict & annotate CDSs... | |
18 predicted: 2 | |
19 discarded spurious: 0 | |
20 revised translational exceptions: 0 | |
21 detected IPSs: 0 | |
22 found PSCs: 0 | |
23 found PSCCs: 0 | |
24 lookup annotations... | |
25 conduct expert systems... | |
26 amrfinder: 0 | |
27 protein sequences: 0 | |
28 combine annotations and mark hypotheticals... | |
29 detect pseudogenes... | |
30 pseudogene candidates: 0 | |
31 found pseudogenes: 0 | |
32 analyze hypothetical proteins: 2 | |
33 detected Pfam hits: 0 | |
34 calculated proteins statistics | |
35 revise special cases... | |
36 extract sORF... | |
37 potential: 22 | |
38 discarded due to overlaps: 2 | |
39 discarded spurious: 0 | |
40 detected IPSs: 0 | |
41 found PSCs: 0 | |
42 lookup annotations... | |
43 filter and combine annotations... | |
44 filtered sORFs: 0 | |
45 detect gaps... | |
46 found: 0 | |
47 detect oriCs/oriVs... | |
48 found: 0 | |
49 detect oriTs... | |
50 found: 0 | |
51 apply feature overlap filters... | |
52 select features and create locus tags... | |
53 selected: 2 | |
54 | |
55 genome statistics: | |
56 Genome size: 1,330 bp | |
57 Contigs/replicons: 1 | |
58 GC: 45.2 % | |
59 N50: 1,330 | |
60 N ratio: 0.0 % | |
61 coding density: 62.0 % | |
62 | |
63 annotation summary: | |
64 tRNAs: 0 | |
65 tmRNAs: 0 | |
66 rRNAs: 0 | |
67 ncRNAs: 0 | |
68 ncRNA regions: 0 | |
69 CRISPR arrays: 0 | |
70 CDSs: 2 | |
71 hypotheticals: 2 | |
72 pseudogenes: 0 | |
73 signal peptides: 0 | |
74 sORFs: 0 | |
75 gaps: 0 | |
76 oriCs/oriVs: 0 | |
77 oriTs: 0 | |
78 | |
79 export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/4/working | |
80 human readable TSV... | |
81 GFF3... | |
82 INSDC GenBank & EMBL... | |
83 genome sequences... | |
84 feature nucleotide sequences... | |
85 translated CDS sequences... | |
86 circular genome plot... | |
87 hypothetical TSV... | |
88 translated hypothetical CDS sequences... | |
89 machine readable JSON... | |
90 genome and annotation summary... | |
91 | |
92 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 | |
93 Annotation successfully finished in 0:00 [mm:ss]. |