Mercurial > repos > thanhlv > bakta
diff test-data/TEST_2/TEST_2.log @ 0:54ca20519f70 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
| author | thanhlv |
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| date | Fri, 28 Apr 2023 17:18:48 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_2/TEST_2.log Fri Apr 28 17:18:48 2023 +0000 @@ -0,0 +1,93 @@ +parse genome sequences... + imported: 1 + filtered & revised: 1 + plasmids: 1 + +start annotation... +skip tRNA prediction... +skip tmRNA prediction... +predict rRNAs... + found: 0 +predict ncRNAs... + found: 0 +predict ncRNA regions... + found: 0 +predict CRISPR arrays... + found: 0 +predict & annotate CDSs... + predicted: 2 + discarded spurious: 0 + revised translational exceptions: 0 + detected IPSs: 0 + found PSCs: 0 + found PSCCs: 0 + lookup annotations... + conduct expert systems... + amrfinder: 0 + protein sequences: 0 + combine annotations and mark hypotheticals... + detect pseudogenes... + pseudogene candidates: 0 + found pseudogenes: 0 +analyze hypothetical proteins: 2 + detected Pfam hits: 0 + calculated proteins statistics + revise special cases... +extract sORF... + potential: 22 + discarded due to overlaps: 2 + discarded spurious: 0 + detected IPSs: 0 + found PSCs: 0 + lookup annotations... + filter and combine annotations... + filtered sORFs: 0 +detect gaps... + found: 0 +detect oriCs/oriVs... + found: 0 +detect oriTs... + found: 0 +apply feature overlap filters... +select features and create locus tags... +selected: 2 + +genome statistics: + Genome size: 1,330 bp + Contigs/replicons: 1 + GC: 45.2 % + N50: 1,330 + N ratio: 0.0 % + coding density: 62.0 % + +annotation summary: + tRNAs: 0 + tmRNAs: 0 + rRNAs: 0 + ncRNAs: 0 + ncRNA regions: 0 + CRISPR arrays: 0 + CDSs: 2 + hypotheticals: 2 + pseudogenes: 0 + signal peptides: 0 + sORFs: 0 + gaps: 0 + oriCs/oriVs: 0 + oriTs: 0 + +export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/4/working + human readable TSV... + GFF3... + INSDC GenBank & EMBL... + genome sequences... + feature nucleotide sequences... + translated CDS sequences... + circular genome plot... + hypothetical TSV... + translated hypothetical CDS sequences... + machine readable JSON... + genome and annotation summary... + +If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 +Annotation successfully finished in 0:00 [mm:ss].