Mercurial > repos > thanhlv > bakta
diff test-data/TEST_3/TEST_3.log @ 0:54ca20519f70 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
| author | thanhlv |
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| date | Fri, 28 Apr 2023 17:18:48 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_3/TEST_3.log Fri Apr 28 17:18:48 2023 +0000 @@ -0,0 +1,57 @@ +parse genome sequences... + imported: 1 + filtered & revised: 1 + plasmids: 1 + +start annotation... +skip tRNA prediction... +skip tmRNA prediction... +skip rRNA prediction... +skip ncRNA prediction... +skip ncRNA region prediction... +skip CRISPR array prediction... +skip CDS prediction... +skip sORF prediction... +skip gap annotation... +skip oriC/T annotation... +apply feature overlap filters... +select features and create locus tags... +selected: 0 + +genome statistics: + Genome size: 1,330 bp + Contigs/replicons: 1 + GC: 45.2 % + N50: 1,330 + N ratio: 0.0 % + coding density: 0.0 % + +annotation summary: + tRNAs: 0 + tmRNAs: 0 + rRNAs: 0 + ncRNAs: 0 + ncRNA regions: 0 + CRISPR arrays: 0 + CDSs: 0 + hypotheticals: 0 + pseudogenes: 0 + signal peptides: 0 + sORFs: 0 + gaps: 0 + oriCs/oriVs: 0 + oriTs: 0 + +export annotation results to: /tmp/tmpmnqj1xog/job_working_directory/000/6/working + human readable TSV... + GFF3... + INSDC GenBank & EMBL... + genome sequences... + feature nucleotide sequences... + translated CDS sequences... + circular genome plot... + machine readable JSON... + genome and annotation summary... + +If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 +Annotation successfully finished in 0:00 [mm:ss].