Mercurial > repos > thanhlv > biotradis
diff biotradis_remove_tags.xml @ 7:09c1f97a5bcc draft
"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/biotradis commit 1c12becfd708c0635632ab92620a846764ec4559-dirty"
author | thanhlv |
---|---|
date | Fri, 06 Dec 2019 10:11:20 -0500 |
parents | afe9a515d145 |
children |
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--- a/biotradis_remove_tags.xml Wed Oct 23 10:40:28 2019 -0400 +++ b/biotradis_remove_tags.xml Fri Dec 06 10:11:20 2019 -0500 @@ -6,18 +6,18 @@ <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - remove_tags -f $input_bam -t $tag -m $mismatches -o removed -v > $log + remove_tradis_tags -f $input_bam -t $tag -m $mismatches -o removed -v > $log - ]]></command> + ]]> </command> <inputs> - <param name="input_fastq" type="data" format="fastq" label="Fastq file" help="" /> - <param name="tag" type="text" label="Tags to remove" help="" /> - <param name="mismatches" type="integer" value ="0" label="Number of mismatches to allow when matching tag" help="(optional. default = 0)" /> + <param name="input_fastq" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Fastq file"/> + <param name="tag" type="text" label="Tags to remove" /> + <param name="mismatches" type="integer" min="0" value ="0" label="Number of mismatches to allow when matching tag" /> </inputs> <outputs> - <data name="log" format="txt" label="${tool.name} on ${on_string}: Log"/> - <data name="filtered_tags" format="fastqsanger" label="${tool.name} on ${on_string}" from_work_dir="removed.rmtag.fatsq" /> + <data name="log" format="txt" label="${tool.name} on ${on_string}: Log"/> + <data name="filtered_tags" format="fastqsanger" label="${tool.name} on ${on_string}" from_work_dir="removed.rmtag.fatsq" /> </outputs> <tests> @@ -31,6 +31,7 @@ Options: -b : bam file with tradis tags -v : verbose debugging output - ]]></help> + ]]> </help> + <expand macro="citations" /> </tool>