customize_metaphlan_database: test-data/test-db-without-one-marker.json annotate

annotate test-data/test-db-without-one-marker.json @ 1:b6e5df1237f2 draft default tip

planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/metaphlan/

author	thanhlv
date	Mon, 13 Feb 2023 15:37:20 +0000
parents	c0473c69ac9f
children

rev	line source
0 c0473c69ac9f planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/metaphlan/ thanhlv parents: diff changeset	1 {"markers": {"504553__GeneID:10498608": {"ext": ["GCA_003384495", "GCA_003384705", "GCA_003384195", "GCA_000144875", "GCA_003426255", "GCA_000376705", "GCA_000221125", "GCA_001469595", "GCA_002572575", "GCA_000144185", "GCA_003384345", "GCA_001481615", "GCA_000240015", "GCA_003384315", "GCA_000144485", "GCA_003384365", "GCA_000144735", "GCA_000178055", "GCA_001660115", "GCA_000144545", "GCA_000144245", "GCA_000735055", "GCA_001750535", "GCA_003384145", "GCA_003426625", "GCA_000144005", "GCA_003384485", "GCA_001469635", "GCA_000144505", "GCA_000144815", "GCA_000240055", "GCA_000144345", "GCA_003384395", "GCA_003390995", "GCA_003384555", "GCA_003426665", "GCA_000144895", "GCA_000144465", "GCA_900102845", "GCA_002572615", "GCA_002572665", "GCA_000194825", "GCA_003384585", "GCA_003384255", "GCA_000145195", "GCA_000144325", 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"k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_000255155": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2468612], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002202825": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2385918], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002202995": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2446413], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_003003405": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2450842], 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"k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203695": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2451013], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_001889775": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2476729], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_001723455": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2464823], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002201175": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2421952], 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"k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_000241935": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2485519], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002201215": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2397100], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002202335": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2441855], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203785": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2448070], 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"k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203415": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2443190], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_003004395": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2447588], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_001026805": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2395664], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002115305": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2529148], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203395": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2418264], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_003004415": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2439838], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203335": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2489232], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203745": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2352296], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203965": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2426904], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002115185": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2488098], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002201075": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2380348], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_000242775": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2478364], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002202755": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2397464], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_002203595": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2445980], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_001875965": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2437922], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_diphtheriae\|t__GCA_001876085": ["2\|201174\|1760\|85007\|1653\|1716\|1717", 2445565], 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"k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_900163685": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3138078], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000196335": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3282708], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001936195": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3338086], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001912725": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3109311], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001912155": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3263419], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000417765": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3283833], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001912805": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3275235], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000011325": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3309401], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001683115": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3332458], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_002355675": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3297987], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_002243555": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3329895], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000233355": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3311083], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_002003445": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3100840], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000404145": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3350620], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_002163915": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3306634], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001912785": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3173837], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000010225": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3363299], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_003025195": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3326859], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001912735": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3298702], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000742735": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3162487], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_001518935": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3293729], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000742715": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3192886], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000404185": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3350619], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Corynebacteriales\|f__Corynebacteriaceae\|g__Corynebacterium\|s__Corynebacterium_glutamicum\|t__GCA_000224315": ["2\|201174\|1760\|85007\|1653\|1716\|1718", 3262889], 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"k__Bacteria\|p__Firmicutes\|c__Clostridia\|o__Clostridiales\|f__Eubacteriaceae\|g__Pseudoramibacter\|s__Pseudoramibacter_alactolyticus\|t__GCA_000185505": ["2\|1239\|186801\|186802\|186806\|113286\|113287", 2362882], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001479965": ["2\|1224\|1236\|91347\|543\|590\|28901", 4901978], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001080525": ["2\|1224\|1236\|91347\|543\|590\|28901", 4697998], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001479485": ["2\|1224\|1236\|91347\|543\|590\|28901", 4886795], 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"k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001716775": ["2\|1224\|1236\|91347\|543\|590\|28901", 4880066], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001243275": ["2\|1224\|1236\|91347\|543\|590\|28901", 4846786], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001086265": ["2\|1224\|1236\|91347\|543\|590\|28901", 4721661], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001595235": ["2\|1224\|1236\|91347\|543\|590\|28901", 5249967], 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"k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001326155": ["2\|1224\|1236\|91347\|543\|590\|28901", 5040224], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_002042145": ["2\|1224\|1236\|91347\|543\|590\|28901", 4699446], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001110605": ["2\|1224\|1236\|91347\|543\|590\|28901", 4723978], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001356075": ["2\|1224\|1236\|91347\|543\|590\|28901", 4730301], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Salmonella\|s__Salmonella_enterica\|t__GCA_001128065": ["2\|1224\|1236\|91347\|543\|590\|28901", 4733896], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384315": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2548078], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144245": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2524164], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000730485": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2602215], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572655": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2597783], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003425775": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2479049], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144345": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2474828], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001750535": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2534633], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384705": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2554827], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384555": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2478671], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144545": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2476710], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144325": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2476614], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384395": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2536539], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000145195": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2533449], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144445": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2535478], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572745": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2475533], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384255": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2535330], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001481615": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2399738], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384385": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2536583], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144485": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2516818], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384285": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2479017], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144185": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2525356], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572665": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2565440], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000145575": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2478076], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384495": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2480225], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384345": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2548334], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144895": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2512699], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000147145": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2474445], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001660945": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2459678], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572705": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2538403], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001469635": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2470017], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000735055": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2482415], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000240055": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2498766], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000302515": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2519002], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000145375": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2501602], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000240015": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2489623], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572835": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2521197], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572695": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2484604], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144045": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2527934], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144875": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2509602], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002861085": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2545831], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000221125": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2477348], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384365": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2535911], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002775655": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2484088], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144775": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2475439], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572575": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2480279], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000145455": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2521598], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001469655": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2491961], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000488875": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2482461], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384485": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2480536], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002831715": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2531832], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144815": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2502372], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144365": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2527697], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000231215": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2488626], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384445": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2480132], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144795": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2535134], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001469555": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2530708], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000342585": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2477530], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144735": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2503840], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001750555": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2479585], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003426665": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2537190], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001469595": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2560354], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003426225": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2546045], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384145": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2465584], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001750525": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2535892], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144505": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2478512], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000376705": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2549775], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003384195": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2537015], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003390995": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2560321], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000194825": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2556102], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003426625": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2556671], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000145155": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2477898], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003426685": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2535498], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002556485": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2476062], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000144125": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2475756], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001660935": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2461219], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_001660855": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2470761], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_000145095": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2473652], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_002572775": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2525162], "k__Bacteria\|p__Actinobacteria\|c__Actinobacteria\|o__Propionibacteriales\|f__Propionibacteriaceae\|g__Cutibacterium\|s__Cutibacterium_acnes\|t__GCA_003426255": ["2\|201174\|1760\|85009\|31957\|1912216\|1747", 2477474], 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"k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Enterobacter\|s__Enterobacter_cloacae_complex\|t__GCA_002192395": ["2\|1224\|1236\|91347\|543\|547\|354276", 4556770], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Enterobacter\|s__Enterobacter_cloacae_complex\|t__GCA_000958745": ["2\|1224\|1236\|91347\|543\|547\|354276", 4382425], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Enterobacter\|s__Enterobacter_cloacae_complex\|t__GCA_001025055": ["2\|1224\|1236\|91347\|543\|547\|354276", 4360879], "k__Bacteria\|p__Proteobacteria\|c__Gammaproteobacteria\|o__Enterobacterales\|f__Enterobacteriaceae\|g__Enterobacter\|s__Enterobacter_cloacae_complex\|t__GCA_900076455": ["2\|1224\|1236\|91347\|543\|547\|354276", 4404432]}, "merged_taxon": {}}

rev

line source

c0473c69ac9f planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/metaphlan/

thanhlv

parents:

diff changeset

1 {"markers": {"504553__GeneID:10498608": {"ext": ["GCA_003384495", "GCA_003384705", "GCA_003384195", "GCA_000144875", "GCA_003426255", "GCA_000376705", "GCA_000221125", "GCA_001469595", "GCA_002572575", "GCA_000144185", "GCA_003384345", "GCA_001481615", "GCA_000240015", "GCA_003384315", "GCA_000144485", "GCA_003384365", "GCA_000144735", "GCA_000178055", "GCA_001660115", "GCA_000144545", "GCA_000144245", "GCA_000735055", "GCA_001750535", "GCA_003384145", "GCA_003426625", "GCA_000144005", "GCA_003384485", "GCA_001469635", "GCA_000144505", "GCA_000144815", "GCA_000240055", "GCA_000144345", "GCA_003384395", "GCA_003390995", "GCA_003384555", "GCA_003426665", "GCA_000144895", "GCA_000144465", "GCA_900102845", "GCA_002572615", "GCA_002572665", "GCA_000194825", "GCA_003384585", "GCA_003384255", "GCA_000145195", "GCA_000144325", "GCA_000145575", "GCA_000231215", "GCA_000144365", "GCA_000144795", "GCA_002556485", "GCA_002572745", "GCA_003384445", "GCA_001660935", "GCA_001469655", 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Mercurial > repos > thanhlv > customize_metaphlan_database

annotate test-data/test-db-without-one-marker.json @ 1:b6e5df1237f2 draft default tip