Mercurial > repos > thanhlv > fargene
view test-data/paired/hmmsearchresults/orfs-class_B_1_2-hmmsearched.out @ 0:6f78bc71eb12 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
| author | thanhlv |
|---|---|
| date | Fri, 19 Jul 2019 08:42:37 -0400 |
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| children |
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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target # ------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- lcl|NODE_1_length_935_cov_39.160227_seq1:c932-117_1 - 272 b1_b2_70_centroids-aligned - 248 5.2e-85 270.8 0.0 1 1 6.2e-85 6.2e-85 270.6 0.0 7 244 18 269 11 271 0.94 ORF4_NODE_1_length_935_cov_39.160227_seq1:931:116 # # Program: hmmsearch # Version: 3.2.1 (June 2018) # Pipeline mode: SEARCH # Query file: /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm # Target file: /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/tmpdir/orfs-translated.fasta # Option settings: hmmsearch --domtblout /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/hmmsearchresults/orfs-class_B_1_2-hmmsearched.out -E 1000 --domE 1000 /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/tmpdir/orfs-translated.fasta # Current dir: /home/ubuntu/data/fargene/tutorial/tutorialdata # Date: Tue Jul 16 12:47:15 2019 # [ok]