view test-data/ariba/report.tsv @ 0:5fca34360c12 draft default tip

"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"

#ariba_ref_name	ref_name	gene	var_only	flag	reads	cluster	ref_len	ref_base_assembled	pc_ident	ctg	ctg_len	ctg_cov	known_var	var_type	var_seq_type	known_var_change	has_known_var	ref_ctg_change	ref_ctg_effect	ref_start	ref_end	ref_nt	ctg_start	ctg_end	ctg_nt	smtls_total_depth	smtls_nts	smtls_nts_depth	var_description	free_text
AAC_3__IId.3004623.EU022314.1.0_861.5344	AAC_3__IId.3004623.EU022314.1.0_861.5344	1	0	27	256	AAC_3__II-	861	861	99.88	AAC_3__II-.l15.c4.ctg.1	1547	37.8	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	b'AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli';AAC(3)-IId
AAC_6___Ib4.3002577.AF445082.2788_3343.401	AAC_6___Ib4.3002577.AF445082.2788_3343.401	1	0	667	510	AAC_6___Ib+	555	555	99.64	AAC_6___Ib+.l15.c30.ctg.1	619	128.1	0	.	p	.	0	W87R	NONSYN	259	261	TGG	264	266	CGG	86;89;90	C,T,A;G;G	30,28,1;59;63	.	AAC(6')-Ib4;b"AAC(6')-Ib4 is an aminoglycoside acetyltransferase in Serratia spp."
AAC_6___Ib4.3002577.AF445082.2788_3343.401	AAC_6___Ib4.3002577.AF445082.2788_3343.401	1	0	667	510	AAC_6___Ib+	555	555	99.64	AAC_6___Ib+.l15.c30.ctg.1	619	128.1	0	.	p	.	0	S102L	NONSYN	304	306	TCA	309	311	TTA	92;92;92	T;T;A	70;70;71	.	AAC(6')-Ib4;b"AAC(6')-Ib4 is an aminoglycoside acetyltransferase in Serratia spp."
AAC_6___Ib4.3002577.AF445082.2788_3343.401	AAC_6___Ib4.3002577.AF445082.2788_3343.401	1	0	667	510	AAC_6___Ib+	555	555	99.64	AAC_6___Ib+.l15.c30.ctg.1	619	128.1	0	HET	.	.	.	G490T	.	490	490	G	495	495	G	139	G,T	57,46	.	AAC(6')-Ib4;b"AAC(6')-Ib4 is an aminoglycoside acetyltransferase in Serratia spp."
BRP_MBL_.3001205.KC503911.1.9883_10249.5446	BRP_MBL_.3001205.KC503911.1.9883_10249.5446	1	0	27	132	BRP_MBL_	366	366	100.0	BRP_MBL_.l6.c4.ctg.1	1085	27.3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	BRP(MBL);b'A novel bleomycin resistance protein encoded by a metallo-beta-lactamase-associated ble gene. Expression of BRP(MBL) confers resistance to bleomycin and bleomycin-like antibiotics in Enterobacteriaceae and Acinetobacter, where it is co-expressed with an MBL and controlled by the same promoter region.'
CRP.3000518.AP009048.1.4153663_4154296.4752	CRP.3000518.AP009048.1.4153663_4154296.4752	1	0	528	58	CRP	633	146	93.84	CRP.l15.c4.ctg.1	477	24.1	0	.	p	.	0	K29T	NONSYN	85	87	AAG	414	416	ACG	14;14;13	A;C;G	10;10;10	.	b'CRP is a global regulator that represses MdtEF multidrug efflux pump expression.';CRP
CTX_M_15.3001878.AY044436.1435_2311.1430	CTX_M_15.3001878.AY044436.1435_2311.1430	1	0	27	274	CTX_M_-	876	876	100.0	CTX_M_-.l15.c4.ctg.1	1793	36.0	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	CTX-M-15;b'CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family'
DHA_7.3002136.HQ456945.0_1140.1865	DHA_7.3002136.HQ456945.0_1140.1865	1	0	16	170	DHA_-	1140	796	100.0	DHA_-.l15.c4.ctg.1	1350	29.8	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	b'DHA-7 is a beta-lactamase found in the Enterobacteriaceae family';DHA-7
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T72A	SNP	72	72	T	86	86	A	506	A	125	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T113G	SNP	113	113	T	127	127	G	376	G	146	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T135C	SNP	135	135	T	149	149	C	343	C,T	116,40	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T137A	SNP	137	137	T	151	151	A	321	A,C	157,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A144G	SNP	144	144	A	158	158	G	311	G,A	120,41	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A152G	SNP	152	152	A	166	166	G	344	G	196	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C163A	SNP	163	163	C	177	177	A	353	A	216	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T174C	SNP	174	174	T	188	188	C	364	C	229	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G264C	SNP	264	264	G	278	278	C	415	C,T,G	306,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C274T	SNP	274	274	C	288	288	T	398	T,C	305,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G285T	SNP	285	285	G	299	299	T	394	T,C,A	299,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C302G	SNP	302	302	C	316	316	G	406	G	303	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G315.	DEL	315	315	G	328	328	C	409	C,A,T	302,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	.317A	INS	317	317	G	331	331	A	409	A,T	300,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A320G	SNP	320	320	A	334	334	G	422	G,A	316,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C331T	SNP	331	331	C	345	345	T	441	T,C	328,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C334T	SNP	334	334	C	348	348	T	445	T,A,G,C	326,1,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A344C	SNP	344	344	A	358	358	C	441	C,A	329,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C357T	SNP	357	357	C	371	371	T	446	T,C,G,A	260,76,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G363A	SNP	363	363	G	377	377	A	452	A,C	339,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T369A	SNP	369	369	T	383	383	A	479	A,C	347,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G543C	SNP	543	543	G	556	556	C	574	C,A	407,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A547C	SNP	547	547	A	560	560	C	572	C	407	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C550.	DEL	550	550	C	562	562	G	577	G,A,T	412,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A613T	SNP	613	613	A	625	625	T	657	T,C,A	504,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A626C	SNP	626	626	A	638	638	C	634	C,T	474,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C853T	SNP	853	853	C	865	865	T	658	T,G	473,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A877T	SNP	877	877	A	889	889	T	668	T,C,G	501,2,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G914A	SNP	914	914	G	926	926	A	673	A	477	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G924A	SNP	924	924	G	936	936	A	624	A,G	450,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C1044A	SNP	1044	1044	C	1056	1056	A	534	A,G	414,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T1173.	DEL	1173	1173	T	1184	1184	C	563	C,G	421,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C1178T	SNP	1178	1178	C	1189	1189	T	575	T,C,A	438,2,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T1211C	SNP	1211	1211	T	1222	1222	C	583	C,G,A	441,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A1220G	SNP	1220	1220	A	1231	1231	G	593	G,C,A,T	413,40,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T1229C	SNP	1229	1229	T	1240	1240	C	599	C,G,A	417,39,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G1444A	SNP	1444	1444	G	1455	1455	A	639	A,G,T	491,2,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G1473A	SNP	1473	1473	G	1484	1484	A	659	A,G,T	502,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T1486A	SNP	1486	1486	T	1497	1497	A	633	A,G,T	328,160,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A1503T	SNP	1503	1503	A	1514	1514	T	634	T,A	487,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C1518T	SNP	1518	1518	C	1529	1529	T	623	T,C,G	483,1,2	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C1547T	SNP	1547	1547	C	1558	1558	T	689	T,C	502,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A1713G	SNP	1713	1713	A	1724	1724	G	675	G,A,C	499,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C1725.	DEL	1725	1725	C	1735	1735	G	643	G,T	483,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A1727C	SNP	1727	1727	A	1737	1737	C	640	C,A,G	475,1,2	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T1729C	SNP	1729	1729	T	1739	1739	C	638	C,T	477,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C1734G	SNP	1734	1734	C	1744	1744	G	644	G,T,A	482,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G1735A	SNP	1735	1735	G	1745	1745	A	645	A,T	487,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A1745G	SNP	1745	1745	A	1755	1755	G	659	G,A,T	497,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T1747C	SNP	1747	1747	T	1757	1757	C	650	C,T	490,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	.1866T	INS	1866	1866	A	1877	1877	T	636	T	475	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G1867C	SNP	1867	1867	G	1878	1878	C	637	C,A,T	473,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	.1872G	INS	1872	1872	A	1884	1884	G	651	G,A,C	476,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C1874A	SNP	1874	1874	C	1886	1886	A	652	A	476	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T2137C	SNP	2137	2137	T	2149	2149	C	554	C,G	426,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A2154G	SNP	2154	2154	A	2166	2166	G	581	G,T,A	435,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G2162A	SNP	2162	2162	G	2174	2174	A	590	A,G	443,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A2205G	SNP	2205	2205	A	2217	2217	G	596	G	454	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A2211G	SNP	2211	2211	A	2223	2223	G	605	G,C,A	456,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T2213C	SNP	2213	2213	T	2225	2225	C	625	C	462	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C2215G	SNP	2215	2215	C	2227	2227	G	622	G,T	462,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	T2265C	SNP	2265	2265	T	2277	2277	C	677	C,T,A	504,3,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	A2270C	SNP	2270	2270	A	2282	2282	C	685	C,G	510,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	G2293A	SNP	2293	2293	G	2305	2305	A	711	A,G	533,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C2339T	SNP	2339	2339	C	2351	2351	T	733	T,C,G	520,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	.	n	.	0	C2636T	SNP	2636	2636	C	2648	2648	T	644	T,G,C	463,1,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	1	SNP	n	G2032U	0	.	.	2032	2032	G	2044	2044	G	671	G	470	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164:0:0:G2032U:.:b'Point mutation in the 23S rRNA of Escherichia coli shown to confer resistance to oxazolidinone type antibiotics'	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	1	SNP	n	G2032A	0	.	.	2032	2032	G	2044	2044	G	671	G	470	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164:0:0:G2032A:.:b'Point mutation in the 23S rRNA of Escherichia coli shown to confer resistance to oxazolidinone type antibiotics'	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	1	SNP	n	G2032C	0	.	.	2032	2032	G	2044	2044	G	671	G	470	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164:0:0:G2032C:.:b'Point mutation in the 23S rRNA of Escherichia coli shown to confer resistance to oxazolidinone type antibiotics'	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	1	SNP	n	G2447U	0	.	.	2447	2447	G	2459	2459	G	681	G	498	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164:0:0:G2447U:.:b'Point mutation in the 23S rRNA of Escherichia coli shown to confer resistance to oxazolidinone type antibiotics'	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	HET	.	.	.	C1595T,A	.	1595	1595	C	1606	1606	C	742	C,T,A	425,112,1	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	HET	.	.	.	T1506C	.	1506	1506	T	1517	1517	T	634	T,C	427,58	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	HET	.	.	.	T102C	.	102	102	T	116	116	T	433	T,C	116,28	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	HET	.	.	.	A104G	.	104	104	A	118	118	A	433	A,G	117,28	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	HET	.	.	.	A136G	.	136	136	G	150	150	A	322	A,G	118,40	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	HET	.	.	.	G1483A	.	1483	1483	G	1494	1494	G	635	G,A	325,161	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	0	0	659	8302	Escherichia_coli_23S	2904	2792	97.1	Escherichia_coli_23S.l15.c17.ctg.1	2822	611.4	0	HET	.	.	.	T143C	.	143	143	C	157	157	T	311	T,C	122,40	.	Escherichia coli 23S rRNA with mutation conferring resistance to oxazolidinone antibiotics
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	.	p	.	0	A43S	NONSYN	127	129	GCT	293	295	TCT	128;129;129	T;C;T,C	91;91;71,20	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	.	p	.	0	L190I	NONSYN	568	570	CTG	734	736	ATC	134;135;135	A,G;T;C	101,1;101;102	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	.	p	.	0	F195H	NONSYN	583	585	TTC	749	751	CAC	137;137;140	C;A;C	102;101;105	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	.	p	.	0	S198T	NONSYN	592	594	TCT	758	760	ACC	145;148;145	A;C;C	108;110;107	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	.	p	.	0	Q252A	NONSYN	754	756	CAG	920	922	GCG	104;103;103	G;C;G	83;82;82	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	.	p	.	0	S254T	NONSYN	760	762	TCT	926	928	ACC	102;102;109	A,T;C;C,T	81,1;82;81,1	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	.	p	.	0	K300N	NONSYN	898	900	AAG	1064	1066	AAC	141;140;144	A;A,T,G;C,G	102;99,1,1;101,1	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	HET	.	.	.	T960C	.	960	960	T	1126	1126	T	120	T,C	44,50	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	1	1	667	624	Escherichia_coli_EF_Tu	1185	1185	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1	1369	106.2	0	HET	.	.	.	T78A	.	78	78	T	244	244	T	110	T,A	67,9	.	Escherichia coli EF-Tu mutants conferring resistance to Enacyloxin IIa
Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	1	1	528	182	Escherichia_coli_PtsI	1728	921	91.64	Escherichia_coli_PtsI.l15.c4.ctg.2	1312	23.5	0	.	p	.	0	I360V	NONSYN	1078	1080	ATC	274	276	GTG	10;10;10	G;T;G	7;7;7	.	Escherichia coli PtsI with mutation conferring resistance to fosfomycin
Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	1	1	528	182	Escherichia_coli_PtsI	1728	921	91.64	Escherichia_coli_PtsI.l15.c4.ctg.2	1312	23.5	0	.	p	.	0	R367K	NONSYN	1099	1101	AGA	295	297	AAA	13;13;13	A;A;A	9;9;9	.	Escherichia coli PtsI with mutation conferring resistance to fosfomycin
Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	1	1	528	182	Escherichia_coli_PtsI	1728	921	91.64	Escherichia_coli_PtsI.l15.c4.ctg.2	1312	23.5	0	.	p	.	0	L374V	NONSYN	1120	1122	CTC	316	318	GTT	13;13;13	G;T;T	8;8;9	.	Escherichia coli PtsI with mutation conferring resistance to fosfomycin
Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	1	1	528	182	Escherichia_coli_PtsI	1728	921	91.64	Escherichia_coli_PtsI.l15.c4.ctg.2	1312	23.5	0	.	p	.	0	R403K	NONSYN	1207	1209	CGC	403	405	AAG	17;17;17	A;A;G	10;10;10	.	Escherichia coli PtsI with mutation conferring resistance to fosfomycin
FosA6.3004111.KU254579.1.59421_59841.4755	FosA6.3004111.KU254579.1.59421_59841.4755	1	0	539	196	FosA-_1	420	420	98.81	FosA-_1.l15.c4.ctg.1	1646	27.2	0	.	p	.	0	I91V	NONSYN	271	273	ATC	808	810	GTC	47;48;49	G;T;C	36;38;39	.	b'fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule.';FosA6
FosA6.3004111.KU254579.1.59421_59841.4755	FosA6.3004111.KU254579.1.59421_59841.4755	1	0	539	196	FosA-_1	420	420	98.81	FosA-_1.l15.c4.ctg.1	1646	27.2	0	.	p	.	0	Q130P	NONSYN	388	390	CAG	925	927	CCG	79;79;80	C;C;G	60;60;61	.	b'fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule.';FosA6
FosA6.3004111.KU254579.1.59421_59841.4755	FosA6.3004111.KU254579.1.59421_59841.4755	1	0	539	196	FosA-_1	420	420	98.81	FosA-_1.l15.c4.ctg.1	1646	27.2	0	.	p	.	0	D138E	NONSYN	412	414	GAT	949	951	GAA	74;74;74	G;A;A	56;56;57	.	b'fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule.';FosA6
H_NS.3000676.BA000007.3.1737690_1738104.5476	H_NS.3000676.BA000007.3.1737690_1738104.5476	1	0	16	44	H_NS	414	111	93.69	H_NS.l15.c4.ctg.1	379	20.6	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H-NS;b'H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE, mdtE, and emrK as well as nearby genes of many RND-type multidrug exporters.'
Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715	Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715	1	1	27	328	Klebsiella_mutant_PhoP	672	672	100.0	Klebsiella_mutant_PhoP.l6.c4.ctg.1	1493	48.2	1	SNP	p	D191Y	0	.	.	571	573	GAC	889	891	GAC	104;104;102	G;A;C	77;77;76	Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715:1:1:D191Y:.:b'A mutant phoP activates pmrHFIJKLM expression responsible for L-aminoarabinose synthesis and polymyxin resistance, by way of alteration of negative charge'	Klebsiella mutant PhoP conferring antibiotic resistance to colistin
Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313	Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313	1	0	539	320	Klebsiella_pneumoniae_KpnE	363	363	99.45	Klebsiella_pneumoniae_KpnE.l15.c4.ctg.1	1236	56.7	0	.	p	.	0	Q112K	NONSYN	334	336	CAG	736	738	AAG	119;119;119	A;A;G	95;95;95	.	b'KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime, ceftriaxon, colistin, erythromycin, rifampin, tetracycline, and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate, deoxycholate, dyes, benzalkonium chloride, chlorhexidine, and triclosan';Klebsiella pneumoniae KpnE
Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312	Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312	1	0	27	280	Klebsiella_pneumoniae_KpnF	330	330	100.0	Klebsiella_pneumoniae_KpnF.l15.c4.ctg.1	1352	45.9	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	b'KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime, ceftriaxon, colistin, erythromycin, rifampin, tetracycline, and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate, deoxycholate, dyes, benzalkonium chloride, chlorhexidine, and triclosan.';Klebsiella pneumoniae KpnF
Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311	Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311	1	0	539	510	Klebsiella_pneumoniae_KpnG	1173	1173	99.32	Klebsiella_pneumoniae_KpnG.l15.c4.ctg.1	1780	66.3	0	.	p	.	0	S137A	NONSYN	409	411	TCC	813	815	GCC	77;77;77	G;C;C	61;61;61	.	Klebsiella pneumoniae KpnG;b'KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin, ceftazidime, ciprofloxacin, ertapenem, erythromycin, gentamicin, imipenem, ticarcillin, norfloxacin, polymyxin-B, piperacillin, spectinomycin, tobramycin, and streptomycin'
Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852	Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852	1	0	27	404	Klebsiella_pneumoniae_OmpK35	684	684	100.0	Klebsiella_pneumoniae_OmpK35.l15.c4.ctg.1	1394	66.2	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	b'Klebsiella pneumoniae outer membrane porin protein. In beta-lactam-resistant Klebsiella, this porin is often deleted, limiting diffusion of the antibiotic into the cell. Klebsiella strains expressing OmpK35 are often beta-lactam sensitive even in the presence of beta-lactamases because of an inefficient mechanism.';Klebsiella pneumoniae OmpK35
Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853	Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853	1	0	539	584	Klebsiella_pneumoniae_OmpK36	1104	1104	99.82	Klebsiella_pneumoniae_OmpK36.l15.c4.ctg.1	1845	74.2	0	.	p	.	0	K195E	NONSYN	583	585	AAA	1061	1063	GAA	88;88;88	G;A;A	62;63;62	.	Klebsiella pneumoniae OmpK36;b'Klebsiella pneumoniae outer membrane porin protein. In beta-lactam-resistant Klebsiella, this porin is often deleted, limiting diffusion of the antibiotic into the cell. Klebsiella strains expressing OmpK36 are often beta-lactam sensitive even in the presence of beta-lactamases because of an inefficient mechanism.'
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	I70M	NONSYN	208	210	ATT	459	461	ATG	88;88;88	A;T;G	58;58;58	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	I128M	NONSYN	382	384	ATT	633	635	ATG	58;58;57	A;T;G,T	51;51;49,1	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	N230G	NONSYN	688	690	AAC	939	941	GGC	46;46;46	G;G;C	39;39;38	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	Q232fs	FSHIFT	694	694	C	945	945	C	46	C	39	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	.	MULTIPLE	697	699	ATG	953	956	CTAT	49;47;50;51	C;T;A;T	42;40;43;44	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	Q235H	NONSYN	703	705	CAG	960	962	CAC	47;45;45	C;A;C	39;38;38	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	T236fs	FSHIFT	706	706	A	963	963	A	45	A	37	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	A238_R239insI	INS	712	712	G	971	971	A	48	A	38	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	.	MULTIPLE	715	717	CGC	977	980	CAAA	48;48;48;48	C;A;A;A	38;37;37;37	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	E244D	NONSYN	730	732	GAA	993	995	GAC	55;55;54	G;A;C,A	38;39;36,4	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	G273_N274insLY	INS	817	817	G	1080	1080	G	50	G	40	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	.	INDELS	820	822	AAT	1090	1095	GCAGTA	52;52;53;56;56;56	G,A;C;A;G;T;A	42,1;43;42;46;46;46	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	.	MULTIPLE	823	825	GAC	1098	1101	AACG	56;56;57;57	A;A;C;G	46;46;47;45	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	1	0	539	526	Klebsiella_pneumoniae_OmpK37	1125	1125	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1	1846	66.2	0	.	p	.	0	.	MULTIPLE	829	831	GTG	1108	1112	GTATC	58;58;58;58;59	G;T;A;T;C	48;48;48;47;49	.	b'Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36, which did not allow penetration by certain beta-lactams. Also, when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35.';Klebsiella pneumoniae OmpK37
NDM_1.3000589.FN396876.2406_3219.4450	NDM_1.3000589.FN396876.2406_3219.4450	1	0	27	186	NDM_-	813	813	100.0	NDM_-.l15.c4.ctg.1	1601	27.2	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	NDM-1;b'NDM-1 is a metallo-beta-lactamase isolated from Klebsiella pneumoniae with nearly complete resistance to all beta-lactam antibiotics.'
OXA_1.3001396.JN420336.1.1399_2230.4668	OXA_1.3001396.JN420336.1.1399_2230.4668	1	0	27	188	OXA_-_3	831	831	100.0	OXA_-_3.l15.c4.ctg.1	1942	22.5	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	b'OXA-1 is a beta-lactamase found in E. coli';OXA-1
SHV_182.3001364.KP050489.0_861.2124	SHV_182.3001364.KP050489.0_861.2124	1	0	539	376	SHV_-	861	861	99.88	SHV_-.l15.c4.ctg.1	2154	41.0	0	.	p	.	0	T102S	NONSYN	304	306	ACG	805	807	TCG	52;52;52	T;C;G	43;43;43	.	SHV-182;b'From the Lahey list of beta-lactamases.'
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	F92S	NONSYN	274	276	TTC	820	822	TCC	77;77;77	T;C;C	63;63;62	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	G103A	NONSYN	307	309	GGC	853	855	GCC	66;66;66	G;C;C	54;54;54	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	Q136K	NONSYN	406	408	CAA	952	954	AAA	55;55;57	A;A;A	42;42;44	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	P145T	NONSYN	433	435	CCC	979	981	ACC	54;54;53	A;C;C	39;38;35	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	N153S	NONSYN	457	459	AAC	1003	1005	AGC	49;49;49	A;G;C	39;39;39	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	T162A	NONSYN	484	486	ACT	1030	1032	GCG	48;48;48	G;C;G,A	38;38;36,1	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	Q175fs	FSHIFT	523	523	C	1068	1068	C	42	C	33	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	L179R	NONSYN	535	537	CTC	1079	1081	CGC	42;42;42	C;G;C	33;32;31	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	.	MULTIPLE	554	555	CG	1097	1098	TT	42;42	T;T	33;32	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	P189T	NONSYN	565	567	CCC	1108	1110	ACC	39;40;40	A;C;C	31;32;32	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	V210L	NONSYN	628	630	GTG	1171	1173	CTG	47;47;46	C;T;G	34;33;33	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004041.AJ318073.1.793_1990.3994	acrA.3004041.AJ318073.1.793_1990.3994	1	0	539	534	acrA	1197	1197	97.74	acrA.l15.c4.ctg.1	2009	61.7	0	.	p	.	0	A234G	NONSYN	700	702	GCC	1243	1245	GGC	54;54;58	G;G;C	39;37;40	.	b'AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae, which is encoded by the acrRAB operon.';Klebsiella pneumoniae acrA
acrA.3004042.DQ679966.299_1493.3995	acrA.3004042.DQ679966.299_1493.3995	1	0	528	44	acrA_1	1194	159	91.19	acrA_1.l15.c4.ctg.1	355	20.0	0	.	p	.	0	Q36H	NONSYN	106	108	CAG	302	304	CAC	3;3;3	C;A;C	3;3;3	.	Enterobacter cloacae acrA;b'AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae.'
acrA.3004042.DQ679966.299_1493.3995	acrA.3004042.DQ679966.299_1493.3995	1	0	528	44	acrA_1	1194	159	91.19	acrA_1.l15.c4.ctg.1	355	20.0	0	.	p	.	0	A37M	NONSYN	109	111	GCG	305	307	ATG	3;3;3	A;T;G	3;3;3	.	Enterobacter cloacae acrA;b'AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae.'
acrA.3004042.DQ679966.299_1493.3995	acrA.3004042.DQ679966.299_1493.3995	1	0	528	44	acrA_1	1194	159	91.19	acrA_1.l15.c4.ctg.1	355	20.0	0	.	p	.	0	V42I	NONSYN	124	126	GTT	320	322	ATT	3;3;3	A;T;T	3;3;3	.	Enterobacter cloacae acrA;b'AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae.'
acrA.3004042.DQ679966.299_1493.3995	acrA.3004042.DQ679966.299_1493.3995	1	0	528	44	acrA_1	1194	159	91.19	acrA_1.l15.c4.ctg.1	355	20.0	0	.	p	.	0	E48A	NONSYN	142	144	GAA	338	340	GCA	3;3;3	G;C;A	3;3;3	.	Enterobacter cloacae acrA;b'AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae.'
acrR.3003373.CP000647.489264_489915.2069	acrR.3003373.CP000647.489264_489915.2069	1	1	27	398	acrR	651	651	99.85	acrR.l6.c4.ctg.1	1331	65.8	1	SNP	p	M109I	0	.	.	325	327	ATG	652	654	ATG	69;69;69	A;T;G	57;54;57	acrR.3003373.CP000647.489264_489915.2069:1:1:M109I:.:b'AcrR is a repressor of the AcrAB-TolC multidrug efflux complex. AcrR mutations result in high level antibiotic resistance.'	Klebsiella pneumoniae acrR with mutation conferring multidrug antibiotic resistance
acrR.3003373.CP000647.489264_489915.2069	acrR.3003373.CP000647.489264_489915.2069	1	1	27	398	acrR	651	651	99.85	acrR.l6.c4.ctg.1	1331	65.8	1	SNP	p	Y114F	0	.	.	340	342	TAT	667	669	TAT	61;61;66	T;A;T	52;52;56	acrR.3003373.CP000647.489264_489915.2069:1:1:Y114F:.:b'AcrR is a repressor of the AcrAB-TolC multidrug efflux complex. AcrR mutations result in high level antibiotic resistance.'	Klebsiella pneumoniae acrR with mutation conferring multidrug antibiotic resistance
acrR.3003373.CP000647.489264_489915.2069	acrR.3003373.CP000647.489264_489915.2069	1	1	27	398	acrR	651	651	99.85	acrR.l6.c4.ctg.1	1331	65.8	1	SNP	p	V165I	0	.	.	493	495	GTG	820	822	GTG	69;69;70	G;T;G	58;57;58	acrR.3003373.CP000647.489264_489915.2069:1:1:V165I:.:b'AcrR is a repressor of the AcrAB-TolC multidrug efflux complex. AcrR mutations result in high level antibiotic resistance.'	Klebsiella pneumoniae acrR with mutation conferring multidrug antibiotic resistance
catB3.3002676.JX101693.1.58200_58833.5450	catB3.3002676.JX101693.1.58200_58833.5450	1	0	16	134	catB3	633	442	100.0	catB3.l15.c4.ctg.1	939	31.5	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	catB3;b'catB3 is a plasmid or chromosome-encoded variant of the cat gene found in Salmonella typhimurium, Acinetobacter baumannii and Escherichia coli'
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	0	.	p	.	0	N2S	NONSYN	4	6	AAT	213	215	AGT	11;13;13	A;G;T	8;9;9	.	Escherichia coli fabG mutations conferring resistance to triclosan
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	0	.	p	.	0	A26V	NONSYN	76	78	GCA	285	287	GTC	14;15;15	G;T;C	10;10;10	.	Escherichia coli fabG mutations conferring resistance to triclosan
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	0	.	p	.	0	N40S	NONSYN	118	120	AAT	327	329	AGC	17;17;17	A;G;C	12;11;12	.	Escherichia coli fabG mutations conferring resistance to triclosan
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	0	.	p	.	0	K72N	NONSYN	214	216	AAA	423	425	AAT	17;17;17	A;A;T	12;12;12	.	Escherichia coli fabG mutations conferring resistance to triclosan
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	0	.	p	.	0	I73V	NONSYN	217	219	ATT	426	428	GTG	17;17;17	G;T;G	12;12;12	.	Escherichia coli fabG mutations conferring resistance to triclosan
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	0	.	p	.	0	E101D	NONSYN	301	303	GAA	510	512	GAC	20;20;20	G;A;C	13;13;13	.	Escherichia coli fabG mutations conferring resistance to triclosan
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	0	.	p	.	0	G146A	NONSYN	436	438	GGC	645	647	GCG	10;10;10	G;C;G	8;8;8	.	Escherichia coli fabG mutations conferring resistance to triclosan
fabG.3004049.U00096.3.1150669_1151404.5523	fabG.3004049.U00096.3.1150669_1151404.5523	1	1	528	42	fabG	735	556	92.27	fabG.l15.c4.ctg.1	765	12.3	1	SNP	p	Y151V	0	.	.	451	453	TAC	660	662	TAC	10;10;9	T;A;C	8;8;7	fabG.3004049.U00096.3.1150669_1151404.5523:1:1:Y151V:.:b'fabG is a 3-oxoacyl-acyl carrier protein reductase involved in lipid metabolism and fatty acid biosynthesis.The bacterial biocide Triclosan blocks the final reduction step in fatty acid elongation, inhibiting biosynthesis. Point mutations in fabG can confer resistance to Triclosan.'	Escherichia coli fabG mutations conferring resistance to triclosan
gyrA.3003940.AE005674.2.2352231_2354859.5265	gyrA.3003940.AE005674.2.2352231_2354859.5265	1	1	528	192	gyrA_9	2628	398	92.71	gyrA_9.l6.c17.ctg.2	724	40.9	0	.	p	.	0	S19N	NONSYN	55	57	AGC	379	381	AAC	102;100;99	A;A;C	68;67;67	.	Shigella flexneri gyrA conferring resistance to fluoroquinolones
gyrA.3003940.AE005674.2.2352231_2354859.5265	gyrA.3003940.AE005674.2.2352231_2354859.5265	1	1	528	192	gyrA_9	2628	398	92.71	gyrA_9.l6.c17.ctg.2	724	40.9	0	.	p	.	0	S83F	NONSYN	247	249	TCG	571	573	TTC	16;16;16	T;T;C	14;14;15	.	Shigella flexneri gyrA conferring resistance to fluoroquinolones
gyrA.3003940.AE005674.2.2352231_2354859.5265	gyrA.3003940.AE005674.2.2352231_2354859.5265	1	1	528	192	gyrA_9	2628	398	92.71	gyrA_9.l6.c17.ctg.2	724	40.9	0	.	p	.	0	D87A	NONSYN	259	261	GAC	583	585	GCC	16;16;16	G;C;C	15;15;15	.	Shigella flexneri gyrA conferring resistance to fluoroquinolones
gyrA.3003940.AE005674.2.2352231_2354859.5265	gyrA.3003940.AE005674.2.2352231_2354859.5265	1	1	528	192	gyrA_9	2628	398	92.71	gyrA_9.l6.c17.ctg.2	724	40.9	1	SNP	p	N57K	0	.	.	169	171	AAT	493	495	AAT	43;42;42	A;A;T,G	30;29;28,1	gyrA.3003940.AE005674.2.2352231_2354859.5265:1:1:N57K:.:b'Point mutations in Shigella flexneri gyrA observed to confer resistance to fluoroquinolone antibiotics.'	Shigella flexneri gyrA conferring resistance to fluoroquinolones
gyrA.3004334.AE006468.2.2373709_2376346.5394	gyrA.3004334.AE006468.2.2373709_2376346.5394	1	1	528	210	gyrA_8	2637	344	92.44	gyrA_8.l15.c4.ctg.2	345	6.7	0	.	p	.	0	N628D	NONSYN	1882	1884	AAC	163	165	GAT	8;8;8	G;A;T	4;4;4	.	Salmonella enterica gyrA with mutation conferring resistance to triclosan
gyrA.3004334.AE006468.2.2373709_2376346.5394	gyrA.3004334.AE006468.2.2373709_2376346.5394	1	1	528	210	gyrA_8	2637	344	92.44	gyrA_8.l15.c4.ctg.2	345	6.7	0	.	p	.	0	D678E	NONSYN	2032	2034	GAC	313	315	GAA	3;3;3	G;A;A	3;3;3	.	Salmonella enterica gyrA with mutation conferring resistance to triclosan
oqxA.3003922.EU370913.1.46651_47827.5460	oqxA.3003922.EU370913.1.46651_47827.5460	1	0	27	474	oqxA	1176	1176	99.23	oqxA.l6.c4.ctg.1	2013	55.6	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	oqxA;b'RND efflux pump conferring resistance to fluoroquinolone'
oqxB.3003923.EU370913.1.47850_51003.5462	oqxB.3003923.EU370913.1.47850_51003.5462	1	0	539	944	oqxB	3153	3153	98.86	oqxB.l15.c4.ctg.1	4068	57.2	0	.	p	.	0	G148N	NONSYN	442	444	GGC	956	958	AAC	56;56;57	A;A;C	45;45;46	.	oqxB;b'RND efflux pump conferring resistance to fluoroquinolone'
oqxB.3003923.EU370913.1.47850_51003.5462	oqxB.3003923.EU370913.1.47850_51003.5462	1	0	539	944	oqxB	3153	3153	98.86	oqxB.l15.c4.ctg.1	4068	57.2	0	.	p	.	0	G540S	NONSYN	1618	1620	GGC	2132	2134	AGC	62;62;62	A;G;C	45;45;45	.	oqxB;b'RND efflux pump conferring resistance to fluoroquinolone'
oqxB.3003923.EU370913.1.47850_51003.5462	oqxB.3003923.EU370913.1.47850_51003.5462	1	0	539	944	oqxB	3153	3153	98.86	oqxB.l15.c4.ctg.1	4068	57.2	0	.	p	.	0	D749E	NONSYN	2245	2247	GAT	2759	2761	GAG	64;64;64	G;A;G,C	49;47;49,1	.	oqxB;b'RND efflux pump conferring resistance to fluoroquinolone'
oqxB.3003923.EU370913.1.47850_51003.5462	oqxB.3003923.EU370913.1.47850_51003.5462	1	0	539	944	oqxB	3153	3153	98.86	oqxB.l15.c4.ctg.1	4068	57.2	0	.	p	.	0	Y783F	NONSYN	2347	2349	TAC	2861	2863	TTC	55;55;54	T;T,G;C	45;43,1;43	.	oqxB;b'RND efflux pump conferring resistance to fluoroquinolone'
oqxB.3003923.EU370913.1.47850_51003.5462	oqxB.3003923.EU370913.1.47850_51003.5462	1	0	539	944	oqxB	3153	3153	98.86	oqxB.l15.c4.ctg.1	4068	57.2	0	.	p	.	0	P1049L	NONSYN	3145	3147	CCC	3659	3661	CTC	12;12;11	C;T;C	11;10;10	.	oqxB;b'RND efflux pump conferring resistance to fluoroquinolone'
ramR.3003380.CP000647.1.622039_622621.4572	ramR.3003380.CP000647.1.622039_622621.4572	1	1	27	392	ramR_1	582	582	100.0	ramR_1.l15.c4.ctg.1	1721	53.5	1	SNP	p	K5E	0	.	.	13	15	AAG	455	457	AAG	139;139;140	A;A;G	102;100;101	ramR.3003380.CP000647.1.622039_622621.4572:1:1:K5E:.:b'RamR is a repressor that regulates RamA expression. Mutations lead to the upregulation of AcrAB, which is positively regulated by RamA.'	Klebsiella pneumoniae ramR mutants
ramR.3003380.CP000647.1.622039_622621.4572	ramR.3003380.CP000647.1.622039_622621.4572	1	1	27	392	ramR_1	582	582	100.0	ramR_1.l15.c4.ctg.1	1721	53.5	1	SNP	p	A16D	0	.	.	46	48	GCT	488	490	GCT	154;154;154	G;C;T	106;107;106	ramR.3003380.CP000647.1.622039_622621.4572:1:1:A16D:.:b'RamR is a repressor that regulates RamA expression. Mutations lead to the upregulation of AcrAB, which is positively regulated by RamA.'	Klebsiella pneumoniae ramR mutants
ramR.3003380.CP000647.1.622039_622621.4572	ramR.3003380.CP000647.1.622039_622621.4572	1	1	27	392	ramR_1	582	582	100.0	ramR_1.l15.c4.ctg.1	1721	53.5	1	SNP	p	A19V	0	.	.	55	57	GCG	497	499	GCG	147;147;147	G,T;C;G	106,1;107;106	ramR.3003380.CP000647.1.622039_622621.4572:1:1:A19V:.:b'RamR is a repressor that regulates RamA expression. Mutations lead to the upregulation of AcrAB, which is positively regulated by RamA.'	Klebsiella pneumoniae ramR mutants
ramR.3003380.CP000647.1.622039_622621.4572	ramR.3003380.CP000647.1.622039_622621.4572	1	1	27	392	ramR_1	582	582	100.0	ramR_1.l15.c4.ctg.1	1721	53.5	1	SNP	p	T43M	0	.	.	127	129	ACG	569	571	ACG	120;115;115	A;C,T;G	94;91,1;93	ramR.3003380.CP000647.1.622039_622621.4572:1:1:T43M:.:b'RamR is a repressor that regulates RamA expression. Mutations lead to the upregulation of AcrAB, which is positively regulated by RamA.'	Klebsiella pneumoniae ramR mutants
ramR.3003380.CP000647.1.622039_622621.4572	ramR.3003380.CP000647.1.622039_622621.4572	1	1	27	392	ramR_1	582	582	100.0	ramR_1.l15.c4.ctg.1	1721	53.5	1	SNP	p	I88N	0	.	.	262	264	ATC	704	706	ATC	92;90;90	A;T;C	71;72;71	ramR.3003380.CP000647.1.622039_622621.4572:1:1:I88N:.:b'RamR is a repressor that regulates RamA expression. Mutations lead to the upregulation of AcrAB, which is positively regulated by RamA.'	Klebsiella pneumoniae ramR mutants
ramR.3003380.CP000647.1.622039_622621.4572	ramR.3003380.CP000647.1.622039_622621.4572	1	1	27	392	ramR_1	582	582	100.0	ramR_1.l15.c4.ctg.1	1721	53.5	1	SNP	p	G96D	0	.	.	286	288	GGC	728	730	GGC	85;85;82	G;G;C	66;65;65	ramR.3003380.CP000647.1.622039_622621.4572:1:1:G96D:.:b'RamR is a repressor that regulates RamA expression. Mutations lead to the upregulation of AcrAB, which is positively regulated by RamA.'	Klebsiella pneumoniae ramR mutants
ramR.3003380.CP000647.1.622039_622621.4572	ramR.3003380.CP000647.1.622039_622621.4572	1	1	27	392	ramR_1	582	582	100.0	ramR_1.l15.c4.ctg.1	1721	53.5	1	SNP	p	T162I	0	.	.	484	486	ACC	926	928	ACC	118;118;118	A;C;C	84;84;83	ramR.3003380.CP000647.1.622039_622621.4572:1:1:T162I:.:b'RamR is a repressor that regulates RamA expression. Mutations lead to the upregulation of AcrAB, which is positively regulated by RamA.'	Klebsiella pneumoniae ramR mutants
rmtC.3000861.KJ476816.1.79_925.3396	rmtC.3000861.KJ476816.1.79_925.3396	1	0	27	254	rmtC	846	846	100.0	rmtC.l15.c17.ctg.1	1579	36.8	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	b'RmtC is a rRNA methyltransferase found in Proteus mirabilis with high level resistance to similar to aminoglycosides, with the exception of non-4,6-disubstituted deoxystreptamines (streptomycin and neomycin). It has also been isolated in Salmonella enterica ser. Virchow. It is hypothesized to methylate G1405, like related methyltransferases RmtA, RmtB, and ArmA.';rmtC
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	608	94.08	rpoB.l15.c4.ctg.1	1275	30.1	0	.	p	.	0	Q83K	NONSYN	247	249	CAG	912	914	AAA	55;54;54	A;A;A	41;41;41	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	608	94.08	rpoB.l15.c4.ctg.1	1275	30.1	1	SNP	p	V146F	0	.	.	436	438	GTT	1101	1103	GTT	13;12;12	G;T;T	13;12;12	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:V146F:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	V242I	NONSYN	724	726	GTG	16	18	ATT	2;2;2	A;T;T	2;2;2	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	V282I	NONSYN	844	846	GTC	136	138	ATC	3;3;3	A;T;C	3;3;3	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	L284H	NONSYN	850	852	CTG	142	144	CAT	3;3;3	C;A;T	3;3;3	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	V297A	NONSYN	889	891	GTT	181	183	GCG	3;3;3	G;C;G	3;3;3	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	S305A	NONSYN	913	915	TCT	205	207	GCG	5;5;5	G;C;G	5;5;5	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	A312P	NONSYN	934	936	GCA	226	228	CCG	6;6;6	C;C;G	5;6;6	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	L351V	NONSYN	1051	1053	TTA	343	345	GTA	7;7;7	G;T;A	7;7;7	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	E412D	NONSYN	1234	1236	GAA	526	528	GAC	26;26;25	G;A;C	22;22;22	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	D427E	NONSYN	1279	1281	GAT	571	573	GAA	30;30;30	G;A;A	27;27;27	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	D596N	NONSYN	1786	1788	GAC	1078	1080	AAC	60;63;64	A;A;C	46;48;50	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	E626N	NONSYN	1876	1878	GAA	1168	1170	AAC	63;63;63	A;A;C	48;48;48	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	V723T	NONSYN	2167	2169	GTC	1459	1461	ACC	53;53;52	A;C;C	43;42;42	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	V777I	NONSYN	2329	2331	GTT	1621	1623	ATT	24;24;24	A;T;T	16;18;16	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	R976Y	NONSYN	2926	2928	CGT	2218	2220	TAC	22;21;21	T;A;C	18;17;17	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	A981S	NONSYN	2941	2943	GCC	2233	2235	TCC	23;23;23	T;C;C	18;18;18	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	Y1087H	NONSYN	3259	3261	TAC	2551	2553	CAC	16;16;16	C;A;C	11;11;11	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	E1089A	NONSYN	3265	3267	GAA	2557	2559	GCT	17;17;17	G;C;T	12;12;12	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	S1162N	NONSYN	3484	3486	AGT	2776	2778	AAT	30;30;32	A;A;T	21;20;21	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	M1170L	NONSYN	3508	3510	ATG	2800	2802	CTG	34;34;34	C;T;G	22;24;22	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	K1200Q	NONSYN	3598	3600	AAA	2890	2892	CAG	37;37;37	C;A;G	27;27;26	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	R1211T	NONSYN	3631	3633	CGC	2923	2925	ACC	36;33;33	A;C;C	27;25;25	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	0	.	p	.	0	Y1213F	NONSYN	3637	3639	TAC	2929	2931	TTT	34;34;35	T;T;T	25;25;25	.	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	Q513L	0	.	.	1537	1539	CAG	829	831	CAG	77;77;77	C;A;G	56;56;56	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:Q513L:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	Q513P	0	.	.	1537	1539	CAG	829	831	CAG	77;77;77	C;A;G	56;56;56	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:Q513P:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	H526Y	0	.	.	1576	1578	CAC	868	870	CAC	84;83;83	C;A,G;C	59;58,1;59	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:H526Y:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	R529C	0	.	.	1585	1587	CGT	877	879	CGT	85;86;86	C;G;T	60;61;61	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:R529C:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	R529S	0	.	.	1585	1587	CGT	877	879	CGT	85;86;86	C;G;T	60;61;61	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:R529S:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	S531F	0	.	.	1591	1593	TCC	883	885	TCC	89;87;86	T;C;C,T	62;61;59,1	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:S531F:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	L533P	0	.	.	1597	1599	CTC	889	891	CTC	87;87;87	C;T;C	61;59;61	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:L533P:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	P564L	0	.	.	1690	1692	CCT	982	984	CCT	67;67;67	C;C;T	51;51;53	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:P564L:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rpoB.3003288.BA000007.3.4990267_4994296.5493	rpoB.3003288.BA000007.3.4990267_4994296.5493	1	1	513	678	rpoB	4029	3321	93.44	rpoB.l15.c4.ctg.2	3739	33.7	1	SNP	p	R687H	0	.	.	2059	2061	CGT	1351	1353	CGT	58;58;58	C;G;T	50;49;49	rpoB.3003288.BA000007.3.4990267_4994296.5493:1:1:R687H:.:b'Point mutations that occurs in Escherichia coli rpoB resulting in resistance to rifampicin'	Escherichia coli rpoB mutants conferring resistance to rifampicin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	G179A	SNP	179	179	G	266	266	A	723	A	525	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C191T	SNP	191	191	C	278	278	T	724	T,C	512,2	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C254T	SNP	254	254	C	341	341	T	666	T,C	513,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C302T	SNP	302	302	C	389	389	T	670	T	521	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A406G	SNP	406	406	A	493	493	G	713	G,C	536,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A410G	SNP	410	410	A	497	497	G	699	G,A,T	341,190,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T412C	SNP	412	412	T	499	499	C	706	C	533	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C672T	SNP	672	672	C	759	759	T	749	T,C	548,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	G720A	SNP	720	720	G	807	807	A	693	A,T,G	519,4,2	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A722C	SNP	722	722	A	809	809	C	689	C	528	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A893T	SNP	893	893	A	980	980	T	679	T	519	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T1069C	SNP	1069	1069	T	1156	1156	C	819	C	590	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C1074A	SNP	1074	1074	C	1161	1161	A	820	A	590	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1086T	SNP	1086	1086	A	1173	1173	T	813	T	584	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C1087T	SNP	1087	1087	C	1174	1174	T	805	T,C	384,193	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1091G	SNP	1091	1091	A	1178	1178	G	811	G,T,A	572,2,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1112G	SNP	1112	1112	A	1199	1199	G	796	G,A	571,2	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T1138C	SNP	1138	1138	T	1225	1225	C	733	C,T	554,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T1273A	SNP	1273	1273	T	1360	1360	A	584	A	454	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T1288C	SNP	1288	1288	T	1375	1375	C	565	C	443	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1293T	SNP	1293	1293	A	1380	1380	T	571	T,C	449,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1296T	SNP	1296	1296	A	1383	1383	T	569	T,A,C	402,43,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1328T	SNP	1328	1328	A	1415	1415	T	584	T,A	464,2	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T1347A	SNP	1347	1347	T	1434	1434	A	588	A,C,T	456,1,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	G1363A	SNP	1363	1363	G	1450	1450	A	605	A,G	154,301	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C1379T	SNP	1379	1379	C	1466	1466	T	716	T	550	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1443G	SNP	1443	1443	A	1530	1530	G	857	G,T	611,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	G1451C	SNP	1451	1451	G	1538	1538	C	851	C	610	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	A1454G	SNP	1454	1454	A	1541	1541	G	846	G,C	605,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C1457.	DEL	1457	1457	C	1543	1543	G	831	G,T,A	600,1,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	G1466.	DEL	1466	1466	G	1551	1551	T	820	T,A	604,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C1470T	SNP	1470	1470	C	1555	1555	T	822	T	605	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	C1471G	SNP	1471	1471	C	1556	1556	G	823	G,C	605,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T1474C	SNP	1474	1474	T	1559	1559	C	821	C,G	598,2	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	.	n	.	0	T1480C	SNP	1480	1480	T	1565	1565	C	820	C	590	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	1	SNP	n	C1065U	0	.	.	1065	1065	C	1152	1152	C	819	C,T	591,1	rrsD.3003512.AE006468.3570463_3572006.3227:0:0:C1065U:.:b'Point mutations in the helix 34 region of the rrsD 16S rRNA gene of Salmonella enterica serovar Typhimurium can confer resistance to spectinomycin'	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	1	SNP	n	C1192U	0	.	.	1192	1192	C	1279	1279	C	713	C	523	rrsD.3003512.AE006468.3570463_3572006.3227:0:0:C1192U:.:b'Point mutations in the helix 34 region of the rrsD 16S rRNA gene of Salmonella enterica serovar Typhimurium can confer resistance to spectinomycin'	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	T526A	.	526	526	T	613	613	T	821	T,A	441,136	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	C527G,T,A	.	527	527	C	614	614	C	821	C,G,T,A	434,138,1,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	C559T	.	559	559	C	646	646	C	781	C,T	510,63	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	C1071A,T,G	.	1071	1071	C	1158	1158	C	806	C,A,T,G	240,342,1,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	C1072T	.	1072	1072	T	1159	1159	C	807	C,T	310,274	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	A1073G,T	.	1073	1073	G	1160	1160	A	807	A,G,T	310,269,2	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	G1234A	.	1234	1234	G	1321	1321	G	654	G,A	418,54	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	G536C	.	536	536	G	623	623	G	826	G,C	440,134	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	G409T,A,C	.	409	409	T	496	496	G	699	G,T,A,C	462,72,1,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	A537T	.	537	537	A	624	624	A	826	A,T	444,136	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	G926A,T	.	926	926	G	1013	1013	G	698	G,A,T	474,65,2	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
rrsD.3003512.AE006468.3570463_3572006.3227	rrsD.3003512.AE006468.3570463_3572006.3227	0	0	659	6088	rrsB+	1544	1544	97.22	rrsB+.l15.c17.ctg.1	1693	765.7	0	HET	.	.	.	A1089C,T,G	.	1089	1089	A	1176	1176	A	807	A,C,T,G	312,194,74,1	.	Salmonella enterica 16S rRNA (rrsD) mutation conferring resistance to spectinomycin
sul1.3000410.JF969163.1053_1893.340	sul1.3000410.JF969163.1053_1893.340	1	0	27	360	sul1	840	840	99.88	sul1.l15.c17.ctg.1	1783	43.9	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	b'Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons.';sul1