Mercurial > repos > thanhlv > humann_split_stratified_table
diff humann_split_stratified_table.xml @ 0:81e57f1d3937 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 6b06711cfba45855d5a992ed1c73c472eaef644f
| author | thanhlv |
|---|---|
| date | Mon, 13 Feb 2023 16:23:45 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/humann_split_stratified_table.xml Mon Feb 13 16:23:45 2023 +0000 @@ -0,0 +1,46 @@ +<tool id="humann_split_stratified_table" name="Split a HUMAnN table" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" > + <description>into 2 tables (one stratified and one unstratified)</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="edam_ontology"/> + <expand macro="requirements"/> + <expand macro="version"/> + <command detect_errors="exit_code"><![CDATA[ +humann_split_stratified_table + --input '$input' + --output 'output' + ]]></command> + <inputs> + <param argument="--input" type="data" format="tsv,tabular" label="Stratified input table"/> + </inputs> + <outputs> + <data format="tabular" name="stratified" from_work_dir="output/*_stratified*" label="${tool.name} on ${on_string}: Stratified table"/> + <data format="tabular" name="unstratified" from_work_dir="output/*_unstratified*" label="${tool.name} on ${on_string}: Unstratified table"/> + </outputs> + <tests> + <test expect_num_outputs="2"> + <param name="input" value="demo_genefamilies.tsv"/> + <output name="stratified" ftype="tabular"> + <assert_contents> + <has_text text="UniRef90_A0A174QBF2|g__Bacteroides.s__Bacteroides_vulgatus" /> + <has_text text="UniRef90_A0A3E5DKA1|g__Bacteroides.s__Bacteroides_vulgatus" /> + </assert_contents> + </output> + <output name="unstratified" ftype="tabular"> + <assert_contents> + <has_text text="UniRef90_A0A174QBF2" /> + <not_has_text text="UniRef90_A0A174QBF2|g__Bacteroides.s__Bacteroides_vulgatus" /> + <has_text text="UniRef90_A0A3E5DKA1" /> + <not_has_text text="UniRef90_A0A3E5DKA1|g__Bacteroides.s__Bacteroides_vulgatus" /> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ +@HELP_HEADER@ + +This tool splits a stratified table into two files (one stratified and one unstratified). + ]]></help> + <expand macro="citations"/> +</tool>