Mercurial > repos > thanhlv > humann_strain_profiler

view test-data/demo-taxonomic-profile.tabular @ 0:db4f6b239f5e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 6b06711cfba45855d5a992ed1c73c472eaef644f
author thanhlv
date Mon, 13 Feb 2023 16:18:40 +0000
parents
children
line wrap: on
line source

#full-db
#metaphlan in --input_type fasta --read_min_len 70 --bt2_ps very-sensitive --min_mapq_val 5 --bowtie2db test-data/test-db/metaphlan-db --index demo-db-v30 -t rel_ab --tax_lev a --min_cu_len 2000 --add_viruses --stat_q 0.2 --perc_nonzero 0.33 --avoid_disqm --sample_id_key SampleID --sample_id Metaphlan_Analysis -o /tmp/tmp7hcectnz/files/000/dataset_2.dat --bowtie2out bowtie2out -s /tmp/tmp7hcectnz/files/000/dataset_4.dat --biom /tmp/tmp7hcectnz/files/000/dataset_5.dat --nproc 1
#SampleID	Metaphlan_Analysis
#clade_name	NCBI_tax_id	relative_abundance	additional_species
k__Bacteria	2	100.0	
k__Bacteria|p__Bacteroidetes	2|976	100.0	
k__Bacteria|p__Bacteroidetes|c__Bacteroidia	2|976|200643	100.0	
k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales	2|976|200643|171549	100.0	
k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae	2|976|200643|171549|815	100.0	
k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides	2|976|200643|171549|815|816	100.0	
k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_vulgatus	2|976|200643|171549|815|816|821	50.80292	
k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_dorei	2|976|200643|171549|815|816|357276	49.19708