Mercurial > repos > thanhlv > integron_finder

comparison test-data/covar.txt @ 0:3a24265075bd draft default tip

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/blob/master/tools/integron_finder commit 6b06711cfba45855d5a992ed1c73c472eaef644f
author thanhlv
date Mon, 13 Feb 2023 13:53:43 +0000
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-1:000000000000 0:3a24265075bd
1 INFERNAL1/a [1.1 | October 2013]
2 NAME attC_4
3 STATES 145
4 NODES 35
5 CLEN 47
6 W 895
7 ALPH RNA
8 RF yes
9 CONS yes
10 MAP yes
11 DATE Mon Jan 19 20:03:31 2015
12 COM [1] cmbuild --hand attc_4.cm attc_train_set_4.sto
13 COM [2] cmcalibrate attc_4.cm
14 PBEGIN 0.05
15 PEND 0.05
16 WBETA 1e-07
17 QDBBETA1 1e-07
18 QDBBETA2 1e-15
19 N2OMEGA 1.52588e-05
20 N3OMEGA 1.52588e-05
21 ELSELF -0.08926734
22 NSEQ 96
23 EFFN 96.000000
24 CKSUM 3931512547
25 NULL 0.000 0.000 0.000 0.000
26 EFP7GF -9.9186 0.72993
27 ECMLC 0.63005 -4.33175 4.20996 1600000 260875 0.004600
28 ECMGC 0.41832 -12.02668 0.81138 1600000 85985 0.004652
29 ECMLI 0.58141 -4.10957 4.92170 1600000 228880 0.005243
30 ECMGI 0.42824 -10.63745 1.38026 1600000 68728 0.005820
31 CM
32 [ ROOT 0 ] - - - - - -
33 S 0 -1 0 1 6 1 2 895 1874 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983
34 IL 1 1 2 1 6 1 6 897 1875 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
35 IR 2 2 3 2 5 1 7 897 1875 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
36 [ MATP 1 ] 1 141 G C [ ]
37 MP 3 2 3 7 6 2 17 896 1874 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -3.249 -1.316 -1.827 1.518 -2.413 -6.970 -1.008 -1.669 -6.771 3.266 -7.041 -1.135 -0.432 -6.231 -1.090 -5.342
38 ML 4 2 3 7 6 1 4 893 1872 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
39 MR 5 2 3 7 6 1 4 893 1871 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
40 D 6 2 3 7 6 0 0 887 1865 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
41 IL 7 7 5 7 6 1 6 895 1873 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
42 IR 8 8 6 8 5 1 6 895 1873 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
43 [ MATP 2 ] 2 140 c g R m
44 MP 9 8 6 13 6 2 16 894 1872 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -4.164 -4.362 -2.109 -0.857 -0.435 -2.882 2.773 -0.766 -4.417 1.213 -4.988 -2.366 1.504 -1.682 -0.391 -1.681
45 ML 10 8 6 13 6 1 4 891 1870 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
46 MR 11 8 6 13 6 1 4 891 1869 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
47 D 12 8 6 13 6 0 0 885 1864 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
48 IL 13 13 5 13 6 1 6 893 1871 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
49 IR 14 14 6 14 5 1 6 893 1871 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
50 [ MATP 3 ] 3 139 C G s i
51 MP 15 14 6 19 6 2 14 892 1870 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -1.807 -6.286 -6.486 1.123 -2.471 -7.327 3.283 -0.390 -6.409 -2.191 -2.297 -4.092 0.801 -6.656 -1.251 -2.606
52 ML 16 14 6 19 6 1 4 889 1868 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
53 MR 17 14 6 19 6 1 3 889 1867 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
54 D 18 14 6 19 6 0 0 884 1862 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
55 IL 19 19 5 19 6 1 5 891 1869 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
56 IR 20 20 6 20 5 1 5 891 1869 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
57 [ MATP 4 ] 4 138 U A e r
58 MP 21 20 6 25 6 2 12 890 1868 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -1.567 -8.813 -8.434 -4.815 -1.986 -2.946 0.157 -7.792 -2.231 -2.356 -8.712 -6.694 3.739 -8.821 -4.591 -1.729
59 ML 22 20 6 25 6 1 3 888 1866 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
60 MR 23 20 6 25 6 1 3 887 1866 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
61 D 24 20 6 25 6 0 0 883 1861 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
62 IL 25 25 5 25 6 1 5 889 1867 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
63 IR 26 26 6 26 5 1 5 889 1867 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
64 [ MATP 5 ] 5 137 A U c p
65 MP 27 26 6 31 6 2 10 888 1867 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -10.570 -9.997 -5.983 3.992 -11.330 -11.473 -9.053 -5.806 -10.659 -6.593 -10.896 -5.995 -9.154 -11.296 -10.137 -5.962
66 ML 28 26 6 31 6 1 3 886 1864 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
67 MR 29 26 6 31 6 1 3 885 1864 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
68 D 30 26 6 31 6 0 0 882 1860 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
69 IL 31 31 5 31 6 1 4 887 1865 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
70 IR 32 32 6 32 5 1 4 887 1865 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
71 [ MATP 6 ] 6 136 A U = R
72 MP 33 32 6 37 6 2 8 886 1865 -12.592 -12.531 -0.012 -7.143 -11.588 -11.983 -10.505 -9.876 -6.003 3.989 -11.293 -11.472 -8.827 -4.132 -10.570 -6.478 -10.833 -5.957 -8.965 -11.262 -10.014 -5.977
73 ML 34 32 6 37 6 1 2 884 1863 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
74 MR 35 32 6 37 6 1 2 884 1862 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
75 D 36 32 6 37 6 0 0 881 1859 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
76 IL 37 37 5 37 6 1 3 885 1864 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
77 IR 38 38 6 38 5 1 3 885 1863 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
78 [ MATP 7 ] 7 135 C G ] [
79 MP 39 38 6 43 4 2 6 884 1863 -11.730 -11.937 -0.002 -10.352 -9.944 -10.195 -1.983 -6.488 -7.012 -8.577 3.966 -8.587 -9.417 -6.461 -8.627 -8.589 -4.408 -9.819 -5.380 -8.218
80 ML 40 38 6 43 4 1 2 883 1861 -4.558 -4.740 -0.269 -3.470 -0.517 1.009 -1.262 -0.198
81 MR 41 38 6 43 4 1 1 882 1860 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
82 D 42 38 6 43 4 0 0 880 1859 -4.568 -4.250 -2.265 -0.520
83 IL 43 43 5 43 4 1 3 884 1862 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
84 IR 44 44 6 44 3 1 2 884 1862 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
85 [ MATL 8 ] 8 - A - = -
86 ML 45 44 6 47 3 1 4 882 1861 -12.654 -0.001 -11.308 1.460 -0.087 -3.247 -2.301
87 D 46 44 6 47 3 0 0 880 1858 -6.174 -1.687 -0.566
88 IL 47 47 3 47 3 1 2 883 1861 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
89 [ MATL 9 ] 9 - A - = -
90 ML 48 47 3 50 3 1 3 881 1860 -12.654 -0.001 -11.308 1.392 -0.247 -1.648 -2.219
91 D 49 47 3 50 3 0 0 879 1857 -6.174 -1.687 -0.566
92 IL 50 50 3 50 3 1 1 882 1860 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
93 [ MATL 10 ] 10 - g - = -
94 ML 51 50 3 53 3 1 2 880 1859 -12.654 -0.020 -6.196 -0.298 -0.774 0.434 0.323
95 D 52 50 3 53 3 0 0 878 1856 -6.174 -1.687 -0.566
96 IL 53 53 3 53 3 1 1 881 1859 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
97 [ MATL 11 ] 11 - U - = -
98 ML 54 53 3 56 3 1 2 879 1858 -12.635 -0.032 -5.518 -1.914 -0.835 0.163 1.039
99 D 55 53 3 56 3 0 0 877 1856 -8.231 -3.744 -0.117
100 IL 56 56 3 56 3 1 1 880 1858 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
101 [ MATL 12 ] 12 - C - = -
102 ML 57 56 3 59 3 1 1 878 1857 -12.603 -4.129 -0.085 -3.211 1.629 -0.844 -2.053
103 D 58 56 3 59 3 0 0 877 1855 -9.376 -4.889 -0.052
104 IL 59 59 3 59 3 1 1 883 1861 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
105 [ MATL 13 ] 13 - A - = -
106 ML 60 59 3 62 3 1 3 881 1860 -8.488 -0.014 -7.142 1.871 -3.422 -2.956 -3.072
107 D 61 59 3 62 3 0 0 877 1855 -13.996 -9.509 -0.002
108 IL 62 62 3 62 3 1 1 882 1860 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
109 [ MATL 14 ] 14 - U - = -
110 ML 63 62 3 65 3 1 2 880 1859 -8.488 -0.014 -7.142 -2.483 -2.313 -3.251 1.813
111 D 64 62 3 65 3 0 0 877 1855 -13.996 -9.509 -0.002
112 IL 65 65 3 65 3 1 1 881 1859 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
113 [ MATL 15 ] 15 - U - = -
114 ML 66 65 3 68 3 1 1 879 1858 -8.850 -1.462 -0.656 -2.483 -2.313 -3.251 1.813
115 D 67 65 3 68 3 0 0 877 1855 -12.730 -4.483 -0.066
116 IL 68 68 3 68 3 1 1 882 1861 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
117 [ MATR 16 ] - 134 - C - =
118 MR 69 68 3 71 3 1 3 881 1859 -8.891 -0.013 -7.209 -3.099 1.851 -3.897 -2.265
119 D 70 68 3 71 3 0 0 877 1855 -13.963 -9.141 -0.003
120 IR 71 71 3 71 3 1 1 881 1860 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
121 [ MATR 17 ] - 133 - U - =
122 MR 72 71 3 74 3 1 3 880 1858 -8.891 -0.013 -7.209 -2.564 -2.382 -3.335 1.824
123 D 73 71 3 74 3 0 0 877 1855 -13.963 -9.141 -0.003
124 IR 74 74 3 74 3 1 1 880 1859 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
125 [ MATR 18 ] - 132 - U - =
126 MR 75 74 3 77 3 1 3 879 1857 -8.891 -0.013 -7.209 -2.564 -2.382 -3.335 1.824
127 D 76 74 3 77 3 0 0 877 1855 -13.963 -5.689 -0.028
128 IR 77 77 3 77 3 1 1 879 1858 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
129 [ MATR 19 ] - 131 - A - =
130 MR 78 77 3 80 3 1 2 878 1857 -9.245 -0.010 -7.562 1.210 -0.707 -0.713 -1.109
131 D 79 77 3 80 3 0 0 877 1855 -13.937 -0.765 -1.281
132 IR 80 80 3 80 3 1 1 878 1857 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
133 [ MATR 20 ] - 130 - C - =
134 MR 81 80 3 83 3 1 2 877 1856 -12.264 -0.001 -10.582 -2.570 1.571 -1.278 -1.160
135 D 82 80 3 83 3 0 0 876 1854 -12.663 -0.136 -3.476
136 IR 83 83 3 83 3 1 1 877 1856 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
137 [ MATR 21 ] - 129 - c - =
138 MR 84 83 3 86 3 1 1 876 1855 -12.905 -0.001 -11.223 -0.302 0.852 0.055 -1.536
139 D 85 83 3 86 3 0 0 875 1853 -9.257 -0.137 -3.487
140 IR 86 86 3 86 3 1 1 876 1855 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
141 [ MATR 22 ] - 128 - G - =
142 MR 87 86 3 89 3 1 1 875 1854 -12.951 -0.001 -11.268 0.549 -1.760 1.082 -2.997
143 D 88 86 3 89 3 0 0 872 1851 -6.390 -1.568 -0.620
144 IR 89 89 3 89 3 1 1 875 1854 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
145 [ MATR 23 ] - 127 - g - =
146 MR 90 89 3 92 3 1 1 874 1853 -12.951 -0.001 -11.268 0.377 -0.568 0.671 -1.199
147 D 91 89 3 92 3 0 0 871 1850 -6.390 -1.568 -0.620
148 IR 92 92 3 92 3 1 1 874 1853 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
149 [ MATR 24 ] - 126 - C - =
150 MR 93 92 3 95 3 1 1 873 1852 -12.951 -0.001 -11.268 -0.886 1.126 -0.297 -1.112
151 D 94 92 3 95 3 0 0 870 1849 -6.390 -1.568 -0.620
152 IR 95 95 3 95 3 1 1 873 1852 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
153 [ MATR 25 ] - 125 - U - =
154 MR 96 95 3 98 5 1 1 872 1851 -11.595 -0.002 -11.410 -11.622 -12.514 -1.444 -0.765 -1.243 1.390
155 D 97 95 3 98 5 0 0 869 1848 -5.352 -0.707 -2.978 -4.409 -2.404
156 IR 98 98 3 98 5 1 1 872 1850 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
157 [ MATP 26 ] 16 124 G C [ ]
158 MP 99 98 3 103 6 2 2 871 1850 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -6.582 -1.557 -6.411 1.191 -7.476 -1.489 1.101 -7.084 -6.836 3.115 -2.324 -2.899 0.456 -1.331 -4.597 -5.381
159 ML 100 98 3 103 6 1 1 869 1847 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
160 MR 101 98 3 103 6 1 1 867 1846 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
161 D 102 98 3 103 6 0 0 863 1841 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
162 IL 103 103 5 103 6 1 1 870 1848 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
163 IR 104 104 6 104 5 1 1 870 1848 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
164 [ MATP 27 ] 17 123 u a = m
165 MP 105 104 6 109 6 2 2 869 1848 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -0.828 -4.312 -4.303 1.181 -4.254 -3.025 2.046 -3.077 -4.365 0.739 -4.937 -2.958 2.474 -1.830 -1.666 -0.703
166 ML 106 104 6 109 6 1 1 867 1845 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
167 MR 107 104 6 109 6 1 1 865 1843 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
168 D 108 104 6 109 6 0 0 861 1840 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
169 IL 109 109 5 109 6 1 1 868 1846 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
170 IR 110 110 6 110 5 1 1 868 1846 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
171 [ MATP 28 ] 18 122 U A L i
172 MP 111 110 6 115 4 2 2 867 1846 -11.741 -11.948 -0.002 -10.362 -0.702 -9.034 -2.124 -0.041 0.340 -9.011 -1.841 -8.027 -8.700 -2.090 -8.930 -6.877 3.625 -9.170 -4.866 -7.506
173 ML 112 110 6 115 4 1 1 865 1844 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
174 MR 113 110 6 115 4 1 1 862 1841 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
175 D 114 110 6 115 4 0 0 860 1839 -4.568 -4.250 -2.265 -0.520
176 IL 115 115 5 115 4 1 1 867 1845 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
177 IR 116 116 6 116 3 1 1 866 1845 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
178 [ MATL 29 ] 19 - C - s -
179 ML 117 116 6 119 5 1 1 865 1844 -11.595 -0.002 -11.410 -11.622 -12.514 -2.365 1.152 0.068 -0.902
180 D 118 116 6 119 5 0 0 858 1836 -4.959 -0.803 -4.221 -2.596 -2.508
181 IL 119 119 3 119 5 1 1 864 1842 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
182 [ MATP 30 ] 20 121 A U e r
183 MP 120 119 3 124 6 2 2 864 1843 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -1.884 -7.244 -7.809 3.089 -6.922 -8.680 2.277 -2.136 -7.694 0.753 -8.160 -4.763 -1.577 -8.142 -4.435 -6.477
184 ML 121 119 3 124 6 1 1 856 1834 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
185 MR 122 119 3 124 6 1 1 853 1831 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
186 D 123 119 3 124 6 0 0 837 1815 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
187 IL 124 124 5 124 6 1 1 861 1840 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
188 IR 125 125 6 125 5 1 1 861 1840 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
189 [ MATP 31 ] 21 120 A U c p
190 MP 126 125 6 130 6 2 2 862 1841 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -8.851 -7.764 -2.118 3.793 -8.437 -10.138 -0.570 -2.650 -8.525 -0.651 -9.020 -5.124 -1.428 -9.742 -6.081 -7.490
191 ML 127 125 6 130 6 1 1 850 1829 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
192 MR 128 125 6 130 6 1 1 847 1826 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
193 D 129 125 6 130 6 0 0 831 1809 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
194 IL 130 130 5 130 6 1 1 859 1837 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
195 IR 131 131 6 131 5 1 1 859 1837 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
196 [ MATP 32 ] 22 119 G C = L
197 MP 132 131 6 136 6 2 2 860 1839 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -6.681 -0.356 -6.503 0.360 -7.617 -1.551 1.417 -1.964 -6.924 3.364 -7.172 -2.953 -2.958 -6.355 -4.698 -5.467
198 ML 133 131 6 136 6 1 1 841 1819 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
199 MR 134 131 6 136 6 1 1 838 1816 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
200 D 135 131 6 136 6 0 0 825 1803 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
201 IL 136 136 5 136 6 1 1 856 1834 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
202 IR 137 137 6 137 5 1 1 856 1834 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
203 [ MATP 33 ] 23 118 c g ] [
204 MP 138 137 6 142 3 2 2 858 1837 -0.007 * -7.643 -0.812 -0.317 -2.510 -0.729 -4.140 -1.090 2.981 -4.503 -4.225 0.880 -1.072 -2.070 0.595 -1.518 -0.284 -3.425
205 ML 139 137 6 142 3 1 1 821 1799 -1.000 * -1.000 0.368 -0.385 -0.191 0.094
206 MR 140 137 6 142 3 1 1 821 1799 -1.000 * -1.000 0.368 -0.385 -0.191 0.094
207 D 141 137 6 142 3 0 0 820 1798 -1.000 * -1.000
208 IL 142 142 5 142 3 1 1 857 1835 -0.027 * -5.744 0.000 0.000 0.000 0.000
209 IR 143 143 6 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
210 [ END 34 ] - - - - - -
211 E 144 143 6 -1 0 0 0 0 0
212 //
213 HMMER3/f [i1.1 | October 2013]
214 NAME attC_4
215 LENG 47
216 MAXL 899
217 ALPH RNA
218 RF yes
219 MM no
220 CONS yes
221 CS yes
222 MAP yes
223 DATE Mon Jan 19 20:03:31 2015
224 COM [1] cmbuild --hand attc_4.cm attc_train_set_4.sto
225 NSEQ 96
226 EFFN 81.594727
227 CKSUM 3931512547
228 STATS LOCAL MSV -8.0165 0.72993
229 STATS LOCAL VITERBI -8.5470 0.72993
230 STATS LOCAL FORWARD -2.8542 0.72993
231 HMM A C G U
232 m->m m->i m->d i->m i->i d->m d->d
233 COMPO 1.36592 1.36257 1.42708 1.39094
234 1.38629 1.38629 1.38629 1.38629
235 0.00204 6.88959 6.88959 1.46634 0.26236 0.00000 *
236 1 1.47847 2.74840 0.46402 2.53536 1 G [ - <
237 1.38629 1.38629 1.38629 1.38629
238 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
239 2 2.80092 0.67279 1.80861 1.32771 2 C R - <
240 1.38629 1.38629 1.38629 1.38629
241 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
242 3 1.85804 0.41549 3.36842 1.90005 3 C s - <
243 1.38629 1.38629 1.38629 1.38629
244 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
245 4 3.69371 2.33806 3.58381 0.16154 4 U e - <
246 1.38629 1.38629 1.38629 1.38629
247 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
248 5 0.00512 6.50309 6.16068 6.50100 5 A c - <
249 1.38629 1.38629 1.38629 1.38629
250 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
251 6 0.00672 5.72139 6.25551 6.50195 6 A = - <
252 1.38629 1.38629 1.38629 1.38629
253 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
254 7 4.27255 0.02200 6.25809 5.13253 7 C ] - <
255 1.38629 1.38629 1.38629 1.38629
256 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
257 8 0.37524 1.45216 3.61000 2.96117 8 A = - -
258 1.38629 1.38629 1.38629 1.38629
259 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
260 9 0.42348 1.56183 2.52300 2.89563 9 A = - -
261 1.38629 1.38629 1.38629 1.38629
262 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
263 10 1.58522 1.91861 1.09174 1.16265 10 g = - -
264 1.38629 1.38629 1.38629 1.38629
265 0.01535 6.88959 4.25350 1.46634 0.26236 1.09861 0.40547
266 11 2.67081 1.96038 1.27856 0.67029 11 U = - -
267 1.38629 1.38629 1.38629 1.38629
268 0.02368 6.87631 3.79983 1.46634 0.26236 2.77000 0.06471
269 12 3.57863 0.25850 1.98007 2.78364 12 C = - -
270 1.38629 1.38629 1.38629 1.38629
271 2.83122 6.85473 0.06187 1.46634 0.26236 3.60115 0.02767
272 13 0.11057 3.55402 3.24839 3.29069 13 A = - -
273 1.38629 1.38629 1.38629 1.38629
274 0.03515 4.05867 4.05867 1.46634 0.26236 6.83206 0.00108
275 14 2.90925 2.82331 3.43701 0.15793 14 U = - -
276 1.38629 1.38629 1.38629 1.38629
277 0.03515 4.05867 4.05867 1.46634 0.26236 6.83206 0.00108
278 15 2.90925 2.82331 3.43701 0.15793 15 U = - -
279 1.38629 1.38629 1.38629 1.38629
280 0.03515 4.05867 4.05867 1.46634 0.26236 0.00216 6.13892
281 16 1.79396 1.85607 0.57562 2.16230 16 G [ - <
282 1.38629 1.38629 1.38629 1.38629
283 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
284 17 1.68938 1.29005 2.11445 0.86890 17 u = - <
285 1.38629 1.38629 1.38629 1.38629
286 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
287 18 2.17270 2.31497 4.10529 0.26023 18 U L - <
288 1.38629 1.38629 1.38629 1.38629
289 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
290 19 2.98995 0.59134 1.34531 1.99756 19 C s - -
291 1.38629 1.38629 1.38629 1.38629
292 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
293 20 0.60908 1.14694 2.20721 3.55669 20 A e - <
294 1.38629 1.38629 1.38629 1.38629
295 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
296 21 0.12915 2.93836 3.14908 3.67645 21 A c - <
297 1.38629 1.38629 1.38629 1.38629
298 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
299 22 2.02391 1.59657 0.43035 4.20022 22 G = - <
300 1.38629 1.38629 1.38629 1.38629
301 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
302 23 1.98545 0.65296 1.80241 1.73005 23 C ] - <
303 1.38629 1.38629 1.38629 1.38629
304 3.89386 0.02162 6.88959 3.98542 0.01876 1.09861 0.40547
305 24 1.96486 1.53408 0.55010 2.69887 118 G [ - >
306 1.38629 1.38629 1.38629 1.38629
307 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
308 25 4.47612 0.34286 1.77423 2.21391 119 C L - >
309 1.38629 1.38629 1.38629 1.38629
310 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
311 26 3.71435 3.19641 2.84131 0.13197 120 U p - >
312 1.38629 1.38629 1.38629 1.38629
313 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
314 27 3.18123 2.23054 1.18098 0.60877 121 U r - >
315 1.38629 1.38629 1.38629 1.38629
316 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
317 28 0.12234 4.14596 3.30449 2.77083 122 A i - >
318 1.38629 1.38629 1.38629 1.38629
319 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
320 29 0.95560 2.00635 1.26122 1.62135 123 a m - >
321 1.38629 1.38629 1.38629 1.38629
322 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
323 30 2.43472 0.49870 1.89972 1.86145 124 C ] - >
324 1.38629 1.38629 1.38629 1.38629
325 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
326 31 2.36885 1.91431 2.24466 0.42617 125 U = - -
327 1.38629 1.38629 1.38629 1.38629
328 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
329 32 1.99009 0.61165 1.59584 2.13601 126 C = - -
330 1.38629 1.38629 1.38629 1.38629
331 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
332 33 1.12677 1.78023 0.92633 2.19536 127 g = - -
333 1.38629 1.38629 1.38629 1.38629
334 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
335 34 1.00976 2.60221 0.63685 3.42260 128 G = - -
336 1.38629 1.38629 1.38629 1.38629
337 0.03382 6.88959 3.43454 1.46634 0.26236 1.09861 0.40547
338 35 1.59086 0.80252 1.35196 2.41555 129 c = - -
339 1.38629 1.38629 1.38629 1.38629
340 0.44710 6.85787 1.02314 1.46634 0.26236 3.51631 0.03016
341 36 3.12832 0.30189 2.27881 2.16819 130 C = - -
342 1.38629 1.38629 1.38629 1.38629
343 2.11131 6.41406 0.13093 1.46634 0.26236 5.92595 0.00267
344 37 0.57651 1.86795 1.86012 2.05532 131 A = - -
345 1.38629 1.38629 1.38629 1.38629
346 0.27640 4.32946 1.47704 1.46634 0.26236 6.81245 0.00110
347 38 2.96395 2.86913 3.49326 0.14939 132 U = - -
348 1.38629 1.38629 1.38629 1.38629
349 0.03415 4.08721 4.08721 1.46634 0.26236 6.83026 0.00108
350 39 2.96395 2.86913 3.49326 0.14939 133 U = - -
351 1.38629 1.38629 1.38629 1.38629
352 0.03415 4.08721 4.08721 1.46634 0.26236 6.83026 0.00108
353 40 3.29366 0.12992 3.86188 2.75374 134 C = - -
354 1.38629 1.38629 1.38629 1.38629
355 0.03415 4.08721 4.08721 1.46634 0.26236 0.00967 4.64385
356 41 5.61227 6.76634 0.00620 6.58877 135 G [ - >
357 1.38629 1.38629 1.38629 1.38629
358 0.00205 6.88254 6.88254 1.46634 0.26236 0.22559 1.59970
359 42 7.50523 6.97196 6.53815 0.00294 136 U R - >
360 1.38629 1.38629 1.38629 1.38629
361 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
362 43 7.47647 6.84256 6.54333 0.00308 137 U p - >
363 1.38629 1.38629 1.38629 1.38629
364 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
365 44 0.12946 3.82317 2.57597 3.75121 138 A r - >
366 1.38629 1.38629 1.38629 1.38629
367 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
368 45 1.95767 3.97633 0.44327 1.61886 139 G i - >
369 1.38629 1.38629 1.38629 1.38629
370 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
371 46 1.46810 1.73501 0.72259 2.22795 140 g m - >
372 1.38629 1.38629 1.38629 1.38629
373 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547
374 47 2.71772 0.47057 2.52869 1.47157 141 C ] - >
375 1.38629 1.38629 1.38629 1.38629
376 0.00102 6.88857 * 1.46634 0.26236 0.00000 *
377 //