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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/blob/master/tools/integron_finder commit 6b06711cfba45855d5a992ed1c73c472eaef644f
author thanhlv
date Mon, 13 Feb 2023 13:53:43 +0000
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# cmd: integron_finder /tmp/tmp3_ir6t5a/files/8/8/3/dataset_883ade04-f62d-4f17-85e7-122e7b43d339.dat --cpu 1 --keep-tmp --topology-file /tmp/tmp3_ir6t5a/files/d/7/c/dataset_d7c8e07c-4b44-480f-9059-a9bff8bf5be6.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9000000000000001e-25	protein	intI	intersection_tyr_intI	In0	Yes	NA	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_20	17375	17722	-1	NA	protein	protein	NA	CALIN	Yes	NA	lin
integron_02	ACBA.007.P01_13	attc_001	17825	17884	-1	1e-09	attC	attC	attc_4	CALIN	Yes	NA	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_21	17886	18665	-1	NA	protein	protein	NA	CALIN	Yes	NA	lin
integron_02	ACBA.007.P01_13	attc_002	19080	19149	-1	0.0001	attC	attC	attc_4	CALIN	Yes	1196.0	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_22	19090	19749	-1	NA	protein	protein	NA	CALIN	Yes	NA	lin
integron_02	ACBA.007.P01_13	attc_003	19618	19726	-1	1.1e-07	attC	attC	attc_4	CALIN	Yes	469.0	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_23	19721	20254	-1	NA	protein	protein	NA	CALIN	Yes	NA	lin