Mercurial > repos > thomaswollmann > anisotropic_diffusion
annotate anisotropic_diffusion.xml @ 0:9a30c8f0f651 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
author | thomaswollmann |
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date | Tue, 21 Feb 2017 09:11:07 -0500 |
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children | 6be26440a8ec |
rev | line source |
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9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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1 <tool id="anisotropic_diffusion" name="Anisotropic Diffusion" version="0.1"> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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2 <description>Edge-preserving, Anisotropic diffusion</description> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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3 <requirements> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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4 <requirement type="package" version="0.12.3" >scikit-image</requirement> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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5 <requirement type="package" version="0.2.2">medpy</requirement> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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6 <requirement type="package" version="1.12">numpy</requirement> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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7 </requirements> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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8 <command> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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9 <![CDATA[ |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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10 python "$__tool_directory__/anisotropic_diffusion.py" '$input' '$output' '$niter' '$kappa' '$gamma' '$eqoption' |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
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11 ]]> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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12 </command> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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13 <inputs> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image file"/> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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15 <param label="Number of iterations" name="niter" optional="true" type="integer" value="50"/> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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16 <param label="Conduction coefficient" name="kappa" optional="true" type="integer" value="50"/> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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17 <param label="Speed of diffusion" name="gamma" optional="true" type="float" value="0.1"/> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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18 <param name="eqoption" type="select" label="Diffusion Feature" help="Perona Malik diffusion equation"> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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19 <option value="1" selected="True">Favour high contrast edges</option> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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20 <option value="2">Favour wide regions</option> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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21 </param> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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22 </inputs> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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23 <outputs> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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24 <data format="tiff" name="output"/> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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25 </outputs> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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26 <tests> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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27 <test> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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28 <param name="input" value="galaxyIcon_noText.png" /> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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29 <param name="niter" value="100" /> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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30 <param name="kappa" value="50" /> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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31 <param name="gamma" value="0.1" /> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
parents:
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32 <param name="eqoption" value="1" /> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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33 <output name="output" ftype="tiff" /> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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34 </test> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
thomaswollmann
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35 </tests> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
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36 <help>Edge-preserving, Anisotropic image diffusion.</help> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
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37 <citations> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
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38 <citation type="doi">10.1109/34.56205</citation> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
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39 </citations> |
9a30c8f0f651
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
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40 </tool> |