Mercurial > repos > thomaswollmann > anisotropic_diffusion

diff anisotropic_diffusion.xml @ 1:6be26440a8ec draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author thomaswollmann
date Wed, 16 Jan 2019 15:33:19 -0500
parents 9a30c8f0f651
children
line wrap: on
line diff
--- a/anisotropic_diffusion.xml	Tue Feb 21 09:11:07 2017 -0500
+++ b/anisotropic_diffusion.xml	Wed Jan 16 15:33:19 2019 -0500
@@ -1,9 +1,9 @@
 <tool id="anisotropic_diffusion" name="Anisotropic Diffusion" version="0.1">
   <description>Edge-preserving, Anisotropic diffusion</description>
   <requirements>
-    <requirement type="package" version="0.12.3" >scikit-image</requirement>
-    <requirement type="package" version="0.2.2">medpy</requirement>
-    <requirement type="package" version="1.12">numpy</requirement>
+    <requirement type="package" version="0.14.0" >scikit-image</requirement>
+    <requirement type="package" version="0.3.0">medpy</requirement>
+    <requirement type="package" version="1.15.4">numpy</requirement>
   </requirements>
   <command>
         <![CDATA[
@@ -11,7 +11,7 @@
         ]]>
   </command>
   <inputs>
-    <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image file"/>
+    <param name="input" type="data" format="tiff" label="Image file"/>
     <param label="Number of iterations" name="niter" optional="true" type="integer" value="50"/>
     <param label="Conduction coefficient" name="kappa" optional="true" type="integer" value="50"/>
     <param label="Speed of diffusion" name="gamma" optional="true" type="float" value="0.1"/>
@@ -25,16 +25,16 @@
   </outputs>
   <tests>
     <test>
-	    <param name="input" value="galaxyIcon_noText.png" />
+	    <param name="input" value="galaxyIcon_noText.tif" />
 	    <param name="niter" value="100" />
-            <param name="kappa" value="50" />
+      <param name="kappa" value="50" />
 	    <param name="gamma" value="0.1" />
 	    <param name="eqoption" value="1" />
-	    <output name="output" ftype="tiff" />
+	    <output name="output" file="res.tif" ftype="tiff" compare="sim_size"/>
     </test>
   </tests>
   <help>Edge-preserving, Anisotropic image diffusion.</help>
   <citations>
-      <citation type="doi">10.1109/34.56205</citation>
+      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
   </citations>
 </tool>