annotate binary2label.xml @ 0:668f8dabb346 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
author thomaswollmann
date Sat, 11 Feb 2017 17:28:57 -0500
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children f772af27a6de
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668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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1 <tool id="binary2labelimage" name="Binary 2 Label" version="0.1">
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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2 <description>Converts Binary to Label Image</description>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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3 <requirements>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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4 <requirement type="package" version="0.12.3" >scikit-image</requirement>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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5 <requirement type="package" version="4.0.0">pillow</requirement>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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6 <requirement type="package" version="1.12">numpy</requirement>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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7 </requirements>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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8 <command>
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9 <![CDATA[
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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10 python "$__tool_directory__/binary2label.py" '$input' '$output'
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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11 ]]>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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12 </command>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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13 <inputs>
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14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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15 </inputs>
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16 <outputs>
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17 <data format="tiff" name="output"/>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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18 </outputs>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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19 <tests>
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20 <test>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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21 <param name="input" value="galaxyIcon_noText.tif" />
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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22 <output name="output" value="label.tif" ftype="tiff" />
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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23 </test>
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24 </tests>
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25 <help>This tool assigns every object an own grey value.</help>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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26 <citations>
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27 <citation type="doi">10.7717/peerj.453</citation>
668f8dabb346 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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28 </citations>
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29 </tool>