Mercurial > repos > thomaswollmann > binary2labelimage
comparison binary2label.xml @ 1:f772af27a6de draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 7c8ef45ea41aa832628cfd1d2931992a2340d7b7
| author | thomaswollmann |
|---|---|
| date | Sun, 12 Feb 2017 05:20:09 -0500 |
| parents | 668f8dabb346 |
| children | 8f98926130d9 |
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| 0:668f8dabb346 | 1:f772af27a6de |
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| 1 <tool id="binary2labelimage" name="Binary 2 Label" version="0.1"> | 1 <tool id="binary2labelimage" name="Binary 2 Label" version="0.2"> |
| 2 <description>Converts Binary to Label Image</description> | 2 <description>Converts Binary to Label Image</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.12.3" >scikit-image</requirement> | 4 <requirement type="package" version="0.12.3" >scikit-image</requirement> |
| 5 <requirement type="package" version="4.0.0">pillow</requirement> | |
| 6 <requirement type="package" version="1.12">numpy</requirement> | |
| 7 </requirements> | 5 </requirements> |
| 8 <command> | 6 <command> |
| 9 <![CDATA[ | 7 <![CDATA[ |
| 10 python "$__tool_directory__/binary2label.py" '$input' '$output' | 8 python '$__tool_directory__/binary2label.py' '$input' '$output' |
| 11 ]]> | 9 ]]> |
| 12 </command> | 10 </command> |
| 13 <inputs> | 11 <inputs> |
| 14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/> | 12 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/> |
| 15 </inputs> | 13 </inputs> |
| 16 <outputs> | 14 <outputs> |
| 17 <data format="tiff" name="output"/> | 15 <data format="tiff" name="output"/> |
| 18 </outputs> | 16 </outputs> |
| 19 <tests> | 17 <tests> |
| 20 <test> | 18 <test> |
| 21 <param name="input" value="galaxyIcon_noText.tif" /> | 19 <param name="input" value="galaxyIcon_noText.tif" /> |
| 22 <output name="output" value="label.tif" ftype="tiff" /> | 20 <output name="output" value="label.tif" ftype="tiff" /> |
| 23 </test> | 21 </test> |
| 24 </tests> | 22 </tests> |
| 25 <help>This tool assigns every object an own grey value.</help> | 23 <help>This tool assigns every object an own grey value.</help> |
| 26 <citations> | 24 <citations> |
| 27 <citation type="doi">10.7717/peerj.453</citation> | 25 <citation type="doi">10.7717/peerj.453</citation> |