Mercurial > repos > thomaswollmann > count_objects
annotate count_objects.xml @ 0:f02a2d0f407c draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author | thomaswollmann |
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date | Wed, 16 Jan 2019 15:34:44 -0500 |
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f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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1 <?xml version="1.0"?> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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2 <tool name="Count Objects" id="ip_count_objects" version="0.0.4"> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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3 <description>Count Objects</description> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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4 <requirements> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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5 <requirement type="package" version="0.14.0">scikit-image</requirement> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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6 <requirement type="package" version="1.15.4">numpy</requirement> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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7 </requirements> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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8 <command> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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9 <![CDATA[ |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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10 python '$__tool_directory__/count_objects.py' '$input' '$output' |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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11 ]]> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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12 </command> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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13 <inputs> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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14 <param name="input" type="data" format="tiff" label="Source file" /> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
parents:
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15 </inputs> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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16 <outputs> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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17 <data format="tabular" name="output" /> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
parents:
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18 </outputs> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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19 <tests> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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20 <test> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
parents:
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21 <param name="input" value="input.tiff"/> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
parents:
diff
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22 <output name="output" value="table.csv" ftype="tabular"/> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
parents:
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23 </test> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
parents:
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24 </tests> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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25 <help> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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26 This tool counts objects in a labeled image. |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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27 </help> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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28 <citations> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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29 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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30 </citations> |
f02a2d0f407c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
thomaswollmann
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31 </tool> |