Mercurial > repos > thomaswollmann > count_objects

diff count_objects.xml @ 0:f02a2d0f407c draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author thomaswollmann
date Wed, 16 Jan 2019 15:34:44 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/count_objects.xml	Wed Jan 16 15:34:44 2019 -0500
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+<?xml version="1.0"?>
+<tool name="Count Objects" id="ip_count_objects" version="0.0.4">
+  <description>Count Objects</description>
+  <requirements>
+    <requirement type="package" version="0.14.0">scikit-image</requirement>
+    <requirement type="package" version="1.15.4">numpy</requirement>
+  </requirements>
+  <command>
+  <![CDATA[
+  python '$__tool_directory__/count_objects.py' '$input' '$output'
+  ]]>
+  </command>
+  <inputs>
+        <param name="input" type="data" format="tiff" label="Source file" />
+  </inputs>
+  <outputs>
+       <data format="tabular" name="output" />
+  </outputs>
+  <tests>
+    <test>
+    <param name="input" value="input.tiff"/>
+    <output name="output" value="table.csv" ftype="tabular"/>
+    </test>
+  </tests>
+    <help>
+    This tool counts objects in a labeled image.
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>