Mercurial > repos > thomaswollmann > count_objects

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author thomaswollmann
date Wed, 16 Jan 2019 15:34:44 -0500
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<?xml version="1.0"?>
<tool name="Count Objects" id="ip_count_objects" version="0.0.4">
  <description>Count Objects</description>
  <requirements>
    <requirement type="package" version="0.14.0">scikit-image</requirement>
    <requirement type="package" version="1.15.4">numpy</requirement>
  </requirements>
  <command>
  <![CDATA[
  python '$__tool_directory__/count_objects.py' '$input' '$output'
  ]]>
  </command>
  <inputs>
        <param name="input" type="data" format="tiff" label="Source file" />
  </inputs>
  <outputs>
       <data format="tabular" name="output" />
  </outputs>
  <tests>
    <test>
    <param name="input" value="input.tiff"/>
    <output name="output" value="table.csv" ftype="tabular"/>
    </test>
  </tests>
    <help>
    This tool counts objects in a labeled image.
    </help>
    <citations>
        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
    </citations>
</tool>