comparison detection_viz.py @ 1:ff66bae1f7f8 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f

0:629d9e8ca64c

    if fn is not None:
        plot_circles(fn, ax, 'red', stroke_size, circle_radius)
    if fp is not None:
        plot_circles(fp, ax, 'darkorange', stroke_size, circle_radius)

    fig.canvas.print_png("tmp.png", dpi=1800)
    os.rename("tmp.png", output_file)

if __name__ == "__main__":
    parser = argparse.ArgumentParser()
    parser.add_argument('input_file', type=argparse.FileType('r'), help='original file')
    # output file should not be of type argparse.FileType('w') sine it is created immediately in this case which leads to an error in renaming

1:ff66bae1f7f8

    if fn is not None:
        plot_circles(fn, ax, 'red', stroke_size, circle_radius)
    if fp is not None:
        plot_circles(fp, ax, 'darkorange', stroke_size, circle_radius)

    fig.canvas.print_png(output_file, dpi=1800)

if __name__ == "__main__":
    parser = argparse.ArgumentParser()
    parser.add_argument('input_file', type=argparse.FileType('r'), help='original file')
    # output file should not be of type argparse.FileType('w') sine it is created immediately in this case which leads to an error in renaming