Mercurial > repos > thomaswollmann > mergeneighboursinlabelimage

comparison mergeneighboursinlabelimage.xml @ 1:3536648d0a93 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d93e1dd276027cfc3fb518236110395a23d96f66
author thomaswollmann
date Wed, 16 Jan 2019 15:35:29 -0500
parents 66f7e94db2e6
children
comparison
equal deleted inserted replaced
0:66f7e94db2e6 1:3536648d0a93
1 <tool id="mergeneighboursinlabelimage" name="Merge Neighbours in Label" version="0.1"> 1 <tool id="mergeneighboursinlabelimage" name="Merge Neighbours in Label" version="0.2">
2 <description>Merge Neighbours in Label Image</description> 2 <description>Merge Neighbours in Label Image</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.12.3" >scikit-image</requirement> 4 <requirement type="package" version="0.14.0">scikit-image</requirement>
5 <requirement type="package">numpy</requirement> 5 <requirement type="package" version="1.15.4">numpy</requirement>
6 <requirement type="package">scipy</requirement>
7 </requirements> 6 </requirements>
8 <command> 7 <command>
9 <![CDATA[ 8 <![CDATA[
10 python '$__tool_directory__/mergeneighboursinlabelimage.py '$input' '$output' -c $c 9 python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c
10 && mv ./tmp.tiff '$output'
11 ]]> 11 ]]>
12 </command> 12 </command>
13 <inputs> 13 <inputs>
14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/> 14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/>
15 <param label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/> 15 <param label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/>
16 </inputs> 16 </inputs>
17 <outputs> 17 <outputs>
18 <data format="tiff" name="output"/> 18 <data format="tiff" name="output"/>
19 </outputs><help>This tools merges nearby objects in a label image using the minimum pixel distance.</help> 19 </outputs>
20 <tests>
21 <test>
22 <param name="input" value="galaxyIcon_noText.tif"/>
23 <param name="c" value="10"/>
24 <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/>
25 </test>
26 </tests>
27 <help>This tools merges nearby objects in a label image using the minimum pixel distance.</help>
20 <citations> 28 <citations>
21 <citation type="doi">10.7717/peerj.453</citation> 29 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
22 </citations> 30 </citations>
23 </tool> 31 </tool>