annotate test-data/chrMT-PE-VCF-BAM-Targeted.vcf @ 7:fc1c7b6fb7b6 draft

planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty

##fileformat=VCFv4.1
##reference=chrMT.fa
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=VMX,Number=1,Type=String,Description="SNP is Missense in these Read Frames">
##INFO=<ID=VNX,Number=1,Type=String,Description="SNP is Nonsense in these Read Frames">
##INFO=<ID=VFX,Number=1,Type=String,Description="Indel Causes Frameshift">
##INFO=<ID=WP,Number=A,Type=Integer,Description="NEAT-GenReads ploidy indicator">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=INS,Description="Insertion of novel sequence">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=CNV,Description="Copy number variable region">
##ALT=<ID=TRANS,Description="Translocation">
##ALT=<ID=INV-TRANS,Description="Inverted translocation">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
MT	335	.	A	AATTA	.	PASS	WP=0/1
MT	4078	.	T	C	.	PASS	WP=0/1
MT	4682	.	A	G	.	PASS	WP=0/1
MT	5713	.	C	T	.	PASS	WP=0/1
MT	6503	.	A	G	.	PASS	WP=0/1
MT	7425	.	C	T	.	PASS	WP=1/0
MT	7778	.	T	C	.	PASS	WP=1/0
MT	8471	.	C	T	.	PASS	WP=1/0
MT	8776	.	C	T	.	PASS	WP=0/1
MT	10750	.	A	G	.	PASS	WP=0/1
MT	11273	.	G	A	.	PASS	WP=0/1
MT	11743	.	C	T	.	PASS	WP=1/0
MT	13132	.	C	CT	.	PASS	WP=0/1
MT	13273	.	A	G	.	PASS	WP=1/0
MT	13804	.	G	A	.	PASS	WP=0/1
MT	14067	.	C	T	.	PASS	WP=0/1