Mercurial > repos > thondeboer > neat_genreads
comparison test-data/chrMT-PE-VCF-BAM-Targeted.vcf @ 0:6e75a84e9338 draft
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
| author | thondeboer |
|---|---|
| date | Tue, 15 May 2018 02:39:53 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:6e75a84e9338 |
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| 1 ##fileformat=VCFv4.1 | |
| 2 ##reference=chrMT.fa | |
| 3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
| 4 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> | |
| 5 ##INFO=<ID=VMX,Number=1,Type=String,Description="SNP is Missense in these Read Frames"> | |
| 6 ##INFO=<ID=VNX,Number=1,Type=String,Description="SNP is Nonsense in these Read Frames"> | |
| 7 ##INFO=<ID=VFX,Number=1,Type=String,Description="Indel Causes Frameshift"> | |
| 8 ##INFO=<ID=WP,Number=A,Type=Integer,Description="NEAT-GenReads ploidy indicator"> | |
| 9 ##ALT=<ID=DEL,Description="Deletion"> | |
| 10 ##ALT=<ID=DUP,Description="Duplication"> | |
| 11 ##ALT=<ID=INS,Description="Insertion of novel sequence"> | |
| 12 ##ALT=<ID=INV,Description="Inversion"> | |
| 13 ##ALT=<ID=CNV,Description="Copy number variable region"> | |
| 14 ##ALT=<ID=TRANS,Description="Translocation"> | |
| 15 ##ALT=<ID=INV-TRANS,Description="Inverted translocation"> | |
| 16 #CHROM POS ID REF ALT QUAL FILTER INFO | |
| 17 MT 335 . A AATTA . PASS WP=0/1 | |
| 18 MT 4078 . T C . PASS WP=0/1 | |
| 19 MT 4682 . A G . PASS WP=0/1 | |
| 20 MT 5713 . C T . PASS WP=0/1 | |
| 21 MT 6503 . A G . PASS WP=0/1 | |
| 22 MT 7425 . C T . PASS WP=1/0 | |
| 23 MT 7778 . T C . PASS WP=1/0 | |
| 24 MT 8471 . C T . PASS WP=1/0 | |
| 25 MT 8776 . C T . PASS WP=0/1 | |
| 26 MT 10750 . A G . PASS WP=0/1 | |
| 27 MT 11273 . G A . PASS WP=0/1 | |
| 28 MT 11743 . C T . PASS WP=1/0 | |
| 29 MT 13132 . C CT . PASS WP=0/1 | |
| 30 MT 13273 . A G . PASS WP=1/0 | |
| 31 MT 13804 . G A . PASS WP=0/1 | |
| 32 MT 14067 . C T . PASS WP=0/1 |