Mercurial > repos > thondeboer > neat_genreads

comparison computeGC.xml @ 3:edca797fa2b2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
author thondeboer
date Tue, 15 May 2018 16:41:15 -0400
parents 8a739c944dbf
children 110fc7a9a016
comparison
equal deleted inserted replaced
2:8a739c944dbf 3:edca797fa2b2
2 name="computeGC" 2 name="computeGC"
3 version="1.0.0" 3 version="1.0.0"
4 profile="16.04"> 4 profile="16.04">
5 <description>computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads</description> 5 <description>computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads</description>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="2.7">python</requirement>
8 <requirement type="package" version="2.25.0">bedtools</requirement> 7 <requirement type="package" version="2.25.0">bedtools</requirement>
9 <requirement type="package" version="1.9.1">numpy</requirement> 8 <requirement type="package" version="1.9.1">numpy</requirement>
10 <requirement type="package">libgfortran</requirement>
11 </requirements> 9 </requirements>
12 <command detect_errors="exit_code"> 10 <command detect_errors="exit_code">
13 <![CDATA[ 11 <![CDATA[
14 bedtools genomecov -d -ibam $bam_file 12 bedtools genomecov -d -ibam $bam_file
15 #if $in_type.input_type == "built-in": 13 #if $in_type.input_type == "built-in":