Mercurial > repos > thondeboer > neat_genreads

diff genMutModel.xml @ 1:362e0b0f7024 draft

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planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
author thondeboer
date Tue, 15 May 2018 15:32:13 -0400
parents 6e75a84e9338
children 8a739c944dbf
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--- a/genMutModel.xml	Tue May 15 02:39:53 2018 -0400
+++ b/genMutModel.xml	Tue May 15 15:32:13 2018 -0400
@@ -6,13 +6,14 @@
   <requirements>
     <requirement type="package" version="1.9.1">numpy</requirement>
     <requirement type="package">matplotlib</requirement>
+	<requirement type="package">libgfortran</requirement>
   </requirements>
   <command detect_errors="exit_code">
     <![CDATA[
 	## Filenames and extensions are important, so make some links to make life easier downstream
 	ln -s $mutation_file mutation_file.vcf
 	#if $in_type.input_type == "built-in":
-	&& ln ${in_type.reference.path} reference.fa
+	&& ln ${in_type.reference.fields.path} reference.fa
 	#else:
 	&& ln ${in_type.reference} reference.fa
 	#end if