# HG changeset patch # User thondeboer # Date 1526417122 14400 # Node ID 110fc7a9a016792e4c766207e5d719eded11f1c2 # Parent edca797fa2b2c0330facced1d9a785e51f7dc5d2 planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty diff -r edca797fa2b2 -r 110fc7a9a016 computeFraglen.xml --- a/computeFraglen.xml Tue May 15 16:41:15 2018 -0400 +++ b/computeFraglen.xml Tue May 15 16:45:22 2018 -0400 @@ -5,7 +5,8 @@ computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads samtools - numpy + numpy + scipy computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads bedtools - numpy + numpy + scipy generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads - numpy + numpy + scipy matplotlib diff -r edca797fa2b2 -r 110fc7a9a016 genSeqErrorModel.xml --- a/genSeqErrorModel.xml Tue May 15 16:41:15 2018 -0400 +++ b/genSeqErrorModel.xml Tue May 15 16:45:22 2018 -0400 @@ -4,7 +4,8 @@ profile="16.04"> generates sequence error model for genReads. Creates model file for use in NEAT-genReads - numpy + numpy + scipy matplotlib diff -r edca797fa2b2 -r 110fc7a9a016 neat_genreads.xml --- a/neat_genreads.xml Tue May 15 16:41:15 2018 -0400 +++ b/neat_genreads.xml Tue May 15 16:45:22 2018 -0400 @@ -4,7 +4,8 @@ profile="16.04"> is a fine-grained read simulator - numpy + numpy + scipy