# HG changeset patch
# User thondeboer
# Date 1526415728 14400
# Node ID 8a739c944dbf8222e9567cb962f5f7d6a908721f
# Parent 362e0b0f7024c7f8a8c212b48f9925d9842fc703
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
diff -r 362e0b0f7024 -r 8a739c944dbf computeFraglen.xml
--- a/computeFraglen.xml Tue May 15 15:32:13 2018 -0400
+++ b/computeFraglen.xml Tue May 15 16:22:08 2018 -0400
@@ -4,6 +4,7 @@
profile="16.04">
computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads
+ python
samtools
numpy
libgfortran
diff -r 362e0b0f7024 -r 8a739c944dbf computeGC.xml
--- a/computeGC.xml Tue May 15 15:32:13 2018 -0400
+++ b/computeGC.xml Tue May 15 16:22:08 2018 -0400
@@ -4,6 +4,7 @@
profile="16.04">
computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads
+ python
bedtools
numpy
libgfortran
diff -r 362e0b0f7024 -r 8a739c944dbf genMutModel.xml
--- a/genMutModel.xml Tue May 15 15:32:13 2018 -0400
+++ b/genMutModel.xml Tue May 15 16:22:08 2018 -0400
@@ -4,6 +4,7 @@
profile="16.04">
generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads
+ python
numpy
matplotlib
libgfortran
diff -r 362e0b0f7024 -r 8a739c944dbf genSeqErrorModel.xml
--- a/genSeqErrorModel.xml Tue May 15 15:32:13 2018 -0400
+++ b/genSeqErrorModel.xml Tue May 15 16:22:08 2018 -0400
@@ -4,6 +4,7 @@
profile="16.04">
generates sequence error model for genReads. Creates model file for use in NEAT-genReads
+ python
numpy
matplotlib
libgfortran
diff -r 362e0b0f7024 -r 8a739c944dbf neat_genreads.xml
--- a/neat_genreads.xml Tue May 15 15:32:13 2018 -0400
+++ b/neat_genreads.xml Tue May 15 16:22:08 2018 -0400
@@ -4,6 +4,7 @@
profile="16.04">
is a fine-grained read simulator
+ python
numpy
libgfortran