# HG changeset patch # User thondeboer # Date 1526415728 14400 # Node ID 8a739c944dbf8222e9567cb962f5f7d6a908721f # Parent 362e0b0f7024c7f8a8c212b48f9925d9842fc703 planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty diff -r 362e0b0f7024 -r 8a739c944dbf computeFraglen.xml --- a/computeFraglen.xml Tue May 15 15:32:13 2018 -0400 +++ b/computeFraglen.xml Tue May 15 16:22:08 2018 -0400 @@ -4,6 +4,7 @@ profile="16.04"> computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads + python samtools numpy libgfortran diff -r 362e0b0f7024 -r 8a739c944dbf computeGC.xml --- a/computeGC.xml Tue May 15 15:32:13 2018 -0400 +++ b/computeGC.xml Tue May 15 16:22:08 2018 -0400 @@ -4,6 +4,7 @@ profile="16.04"> computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads + python bedtools numpy libgfortran diff -r 362e0b0f7024 -r 8a739c944dbf genMutModel.xml --- a/genMutModel.xml Tue May 15 15:32:13 2018 -0400 +++ b/genMutModel.xml Tue May 15 16:22:08 2018 -0400 @@ -4,6 +4,7 @@ profile="16.04"> generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads + python numpy matplotlib libgfortran diff -r 362e0b0f7024 -r 8a739c944dbf genSeqErrorModel.xml --- a/genSeqErrorModel.xml Tue May 15 15:32:13 2018 -0400 +++ b/genSeqErrorModel.xml Tue May 15 16:22:08 2018 -0400 @@ -4,6 +4,7 @@ profile="16.04"> generates sequence error model for genReads. Creates model file for use in NEAT-genReads + python numpy matplotlib libgfortran diff -r 362e0b0f7024 -r 8a739c944dbf neat_genreads.xml --- a/neat_genreads.xml Tue May 15 15:32:13 2018 -0400 +++ b/neat_genreads.xml Tue May 15 16:22:08 2018 -0400 @@ -4,6 +4,7 @@ profile="16.04"> is a fine-grained read simulator + python numpy libgfortran