# HG changeset patch
# User thondeboer
# Date 1526416875 14400
# Node ID edca797fa2b2c0330facced1d9a785e51f7dc5d2
# Parent 8a739c944dbf8222e9567cb962f5f7d6a908721f
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
diff -r 8a739c944dbf -r edca797fa2b2 computeFraglen.xml
--- a/computeFraglen.xml Tue May 15 16:22:08 2018 -0400
+++ b/computeFraglen.xml Tue May 15 16:41:15 2018 -0400
@@ -4,10 +4,8 @@
profile="16.04">
computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads
- python
samtools
numpy
- libgfortran
computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads
- python
bedtools
numpy
- libgfortran
generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads
- python
numpy
matplotlib
- libgfortran
generates sequence error model for genReads. Creates model file for use in NEAT-genReads
- python
numpy
matplotlib
- libgfortran
is a fine-grained read simulator
- python
numpy
- libgfortran