# HG changeset patch # User thondeboer # Date 1526416875 14400 # Node ID edca797fa2b2c0330facced1d9a785e51f7dc5d2 # Parent 8a739c944dbf8222e9567cb962f5f7d6a908721f planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty diff -r 8a739c944dbf -r edca797fa2b2 computeFraglen.xml --- a/computeFraglen.xml Tue May 15 16:22:08 2018 -0400 +++ b/computeFraglen.xml Tue May 15 16:41:15 2018 -0400 @@ -4,10 +4,8 @@ profile="16.04"> computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads - python samtools numpy - libgfortran computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads - python bedtools numpy - libgfortran generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads - python numpy matplotlib - libgfortran generates sequence error model for genReads. Creates model file for use in NEAT-genReads - python numpy matplotlib - libgfortran is a fine-grained read simulator - python numpy - libgfortran