Mercurial > repos > tiagoantao > clone_filter

comparison STACKS_clone_filter.py @ 11:92ba49d68ef1 draft

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planemo upload commit 9b504bd948d6079168cbd5cf6f9aa5e5488cde9b-dirty
author tiagoantao
date Wed, 10 Feb 2016 13:08:20 -0500
parents a8b87bc0c3ad
children
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10:96f850a2b418 11:92ba49d68ef1
41 41
42 if options.oligo_len_1 > -1: 42 if options.oligo_len_1 > -1:
43 cmd_line.extend(['--oligo_len_1', options.oligo_len_1]) 43 cmd_line.extend(['--oligo_len_1', options.oligo_len_1])
44 if options.oligo_len_2 > -1: 44 if options.oligo_len_2 > -1:
45 cmd_line.extend(['--oligo_len_2', options.oligo_len_2]) 45 cmd_line.extend(['--oligo_len_2', options.oligo_len_2])
46 cmd_line.append('--' + options.oligo_len_2) 46 cmd_line.append('--' + options.opt)
47 47
48 print "[CMD]:"+' '.join(cmd_line) 48 print "[CMD]:"+' '.join(cmd_line)
49 subprocess.call(cmd_line) 49 subprocess.call(cmd_line)
50 50
51 # postprocesses 51 # postprocesses