# HG changeset patch
# User tiagoantao
# Date 1454591688 18000
# Node ID 89b911668f1d9b646457aa4b9eddf7590d0b603b
# Parent  a8b87bc0c3ad22b9a0ec098179b55cc6031983d7
planemo upload commit 4d00a0b7a4b859b642eceb3c7cd4adb1453903a0-dirty

diff -r a8b87bc0c3ad -r 89b911668f1d STACKS_clone_filter.xml
--- a/STACKS_clone_filter.xml	Thu Feb 04 08:13:32 2016 -0500
+++ b/STACKS_clone_filter.xml	Thu Feb 04 08:14:48 2016 -0500
@@ -41,8 +41,8 @@
           <param name="rev" type="data" format="fastq" label="Reverse FASTQ" />
       </when>
   </conditional>
-  <param name="oligo_len_1" type="integer" label="length of the single-end oligo sequence in data set (-1 == ignore)"/>
-  <param name="oligo_len_2" type="integer" label="length of the paired-end oligo sequence in data set (-1 == ignore)"/>
+  <param name="oligo_len_1" value="-1" type="integer" label="length of the single-end oligo sequence in data set (-1 == ignore)"/>
+  <param name="oligo_len_2" value="-1" type="integer" label="length of the paired-end oligo sequence in data set (-1 == ignore)"/>
   <param name="oligo_options" type="select" label="Oligo sequence options">
       <option value="inline_null" selected="true">random oligo is inline with sequence, occurs only on single-end read</option>
       <option value="null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option>