Mercurial > repos > timpalpant > java_genomics_toolkit

annotate java-genomics-toolkit/galaxy-conf/galaxyToolRunner.sh @ 0:1daf3026d231

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author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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1 #!/usr/bin/env bash
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2
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3 if [ $# -eq 0 ]
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4 then
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5 echo "USAGE: galaxyToolRunner.sh APPNAME [ARGS]";
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6 exit;
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7 fi
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8
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9 if [ "$1" = "list" ]
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10 then
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11 find src/edu/unc/genomics/**/*.java -exec basename -s .java {} \;
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12 fi
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13
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14 java -Dlog4j.configuration=log4j.properties -cp .:../build:../lib/* edu.unc.genomics."$@"