Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/galaxyToolRunner.sh @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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20
9d56b5b85740 Reuploaded to see if tools get loaded correctly this time.
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1 #!/usr/bin/env bash
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2
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3 if [ $# -eq 0 ]
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4 then
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5 echo "USAGE: galaxyToolRunner.sh APPNAME [ARGS]";
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6 exit;
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7 fi
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8
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9 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
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b43c420a6135 Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
timpalpant
parents: 20
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10 java -Dlog4j.configuration=log4j.properties -cp $DIR:$DIR/../build:$DIR/../dist/*:$DIR/../lib/* edu.unc.genomics."$@"