<tool id="FindWigMaxima" name="Find absolute maxima" version="1.0.0">
  <description>in windows</description>
  <command interpreter="sh">
    galaxyToolRunner.sh ngs.FindAbsoluteMaxima -l $window -o $output
  	  #for $input in $inputs
        ${input.file}
      #end for
  </command>
  <inputs>
    <repeat name="inputs" title="(Big)Wig file">
      <param name="file" type="data" format="bigwig,wig" />
    </repeat>
    <param name="window" type="data" format="bed,bedgraph,gff" label="Windows to find maxima in" />
  </inputs>
  <outputs>
    <data name="output" format="tabular" />
  </outputs>
  
  <help>
    .. class:: warningmark
    
    This tool requires input data in Wig format. Regions should be specified as Bed, BedGraph, or GFF format
  </help>
</tool>
