Mercurial > repos > timpalpant > java_genomics_toolkit
comparison java-genomics-toolkit/galaxyToolConf.xml @ 0:1daf3026d231
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| author | timpalpant |
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| date | Mon, 13 Feb 2012 21:55:55 -0500 |
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| -1:000000000000 | 0:1daf3026d231 |
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| 1 <!-- Add to galaxy/tool_conf.xml within the <toolbox></toolbox> section --> | |
| 2 <label name="Java Genomics Toolkit" /> | |
| 3 <section name="Converters" id="java-genomics-toolkit-converters"> | |
| 4 <tool file="java-genomics-toolkit/galaxy-conf/IntervalToWig.xml" /> | |
| 5 <tool file="java-genomics-toolkit/galaxy-conf/RomanNumeralize.xml" /> | |
| 6 </section> | |
| 7 <section name="Nucleosomes" id="java-genomics-toolkit-nucleosomes"> | |
| 8 <tool file="java-genomics-toolkit/galaxy-conf/FindBoundaryNucleosomes.xml" /> | |
| 9 <tool file="java-genomics-toolkit/galaxy-conf/GreedyCaller.xml" /> | |
| 10 <tool file="java-genomics-toolkit/galaxy-conf/MapDyads.xml" /> | |
| 11 <tool file="java-genomics-toolkit/galaxy-conf/NRLCalculator.xml" /> | |
| 12 <tool file="java-genomics-toolkit/galaxy-conf/Phasogram.xml" /> | |
| 13 </section> | |
| 14 <section name="NGS" id="java-genomics-toolkit-ngs"> | |
| 15 <tool file="java-genomics-toolkit/other-tools/Autocorrelation.xml" /> | |
| 16 <tool file="java-genomics-toolkit/galaxy-conf/BaseAlignCounts.xml" /> | |
| 17 <tool file="java-genomics-toolkit/galaxy-conf/FindAbsoluteMaxima.xml" /> | |
| 18 <tool file="java-genomics-toolkit/galaxy-conf/IntervalLengthDistribution.xml" /> | |
| 19 <tool file="java-genomics-toolkit/galaxy-conf/IntervalStats.xml" /> | |
| 20 <tool file="java-genomics-toolkit/galaxy-conf/PowerSpectrum.xml" /> | |
| 21 <tool file="java-genomics-toolkit/galaxy-conf/RollingReadLength.xml" /> | |
| 22 </section> | |
| 23 <section name="WigMath" id="java-genomics-toolkit-wigmath"> | |
| 24 <tool file="java-genomics-toolkit/galaxy-conf/Add.xml" /> | |
| 25 <tool file="java-genomics-toolkit/galaxy-conf/Average.xml" /> | |
| 26 <tool file="java-genomics-toolkit/galaxy-conf/Divide.xml" /> | |
| 27 <tool file="java-genomics-toolkit/galaxy-conf/GaussianSmooth.xml" /> | |
| 28 <tool file="java-genomics-toolkit/galaxy-conf/LogTransform.xml" /> | |
| 29 <tool file="java-genomics-toolkit/galaxy-conf/MovingAverageSmooth.xml" /> | |
| 30 <tool file="java-genomics-toolkit/galaxy-conf/Multiply.xml" /> | |
| 31 <tool file="java-genomics-toolkit/galaxy-conf/Scale.xml" /> | |
| 32 <tool file="java-genomics-toolkit/galaxy-conf/Subtract.xml" /> | |
| 33 <tool file="java-genomics-toolkit/galaxy-conf/WigSummary.xml" /> | |
| 34 <tool file="java-genomics-toolkit/galaxy-conf/ZScore.xml" /> | |
| 35 </section> | |
| 36 <section name="Visualization" id="java-genomics-toolkit-visualization"> | |
| 37 <tool file="java-genomics-toolkit/galaxy-conf/IntervalAverager.xml" /> | |
| 38 <tool file="java-genomics-toolkit/galaxy-conf/KMeans.xml" /> | |
| 39 <tool file="java-genomics-toolkit/galaxy-conf/MatrixAligner.xml" /> | |
| 40 <tool file="java-genomics-toolkit/galaxy-conf/StripMatrix.xml" /> | |
| 41 </section> |