Mercurial > repos > timpalpant > java_genomics_toolkit
comparison java-genomics-toolkit/resources/toolConf.xml @ 0:1daf3026d231
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| author | timpalpant |
|---|---|
| date | Mon, 13 Feb 2012 21:55:55 -0500 |
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| -1:000000000000 | 0:1daf3026d231 |
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| 1 <?xml version="1.0" encoding="UTF-8"?> | |
| 2 <!-- This is the tool configuration file for the ToolRunner GUI --> | |
| 3 <tools> | |
| 4 <section name="Converters"> | |
| 5 <tool name="IntervalToWig" class="edu.unc.genomics.converters.IntervalToWig" /> | |
| 6 <tool name="RomanNumeralize" class="edu.unc.genomics.converters.RomanNumeralize" /> | |
| 7 </section> | |
| 8 | |
| 9 <section name="NGS"> | |
| 10 <tool name="Autocorrelation" class="edu.unc.genomics.ngs.Autocorrelation" /> | |
| 11 <tool name="BaseAlignCounts" class="edu.unc.genomics.ngs.BaseAlignCounts" /> | |
| 12 <tool name="FindAbsoluteMaxima" class="edu.unc.genomics.ngs.FindAbsoluteMaxima" /> | |
| 13 <tool name="IntervalLengthDistribution" class="edu.unc.genomics.ngs.IntervalLengthDistribution" /> | |
| 14 <tool name="IntervalStats" class="edu.unc.genomics.ngs.IntervalStats" /> | |
| 15 <tool name="PowerSpectrum" class="edu.unc.genomics.ngs.PowerSpectrum" /> | |
| 16 <tool name="RollingReadLength" class="edu.unc.genomics.ngs.RollingReadLength" /> | |
| 17 </section> | |
| 18 | |
| 19 <section name="Nucleosomes"> | |
| 20 <tool name="FindBoundaryNucleosomes" class="edu.unc.genomics.nucleosomes.FindBoundaryNucleosomes" /> | |
| 21 <tool name="GreedyCaller" class="edu.unc.genomics.nucleosomes.GreedyCaller" /> | |
| 22 <tool name="MapDyads" class="edu.unc.genomics.nucleosomes.MapDyads" /> | |
| 23 <tool name="NRLCalculator" class="edu.unc.genomics.nucleosomes.NRLCalculator" /> | |
| 24 <tool name="Phasogram" class="edu.unc.genomics.nucleosomes.Phasogram" /> | |
| 25 </section> | |
| 26 | |
| 27 <section name="Visualization"> | |
| 28 <tool name="IntervalAverager" class="edu.unc.genomics.visualization.IntervalAverager" /> | |
| 29 <tool name="KMeans" class="edu.unc.genomics.visualization.KMeans" /> | |
| 30 <tool name="MatrixAligner" class="edu.unc.genomics.visualization.MatrixAligner" /> | |
| 31 </section> | |
| 32 | |
| 33 <section name="WigMath"> | |
| 34 <tool name="Add" class="edu.unc.genomics.wigmath.Add" /> | |
| 35 <tool name="Average" class="edu.unc.genomics.wigmath.Average" /> | |
| 36 <tool name="Divide" class="edu.unc.genomics.wigmath.Divide" /> | |
| 37 <tool name="GaussianSmooth" class="edu.unc.genomics.wigmath.GaussianSmooth" /> | |
| 38 <tool name="LogTransform" class="edu.unc.genomics.wigmath.LogTransform" /> | |
| 39 <tool name="MovingAverageSmooth" class="edu.unc.genomics.wigmath.MovingAverageSmooth" /> | |
| 40 <tool name="Multiply" class="edu.unc.genomics.wigmath.Multiply" /> | |
| 41 <tool name="Scale" class="edu.unc.genomics.wigmath.Scale" /> | |
| 42 <tool name="Subtract" class="edu.unc.genomics.wigmath.Subtract" /> | |
| 43 <tool name="WigSummary" class="edu.unc.genomics.wigmath.WigSummary" /> | |
| 44 <tool name="ZScore" class="edu.unc.genomics.wigmath.ZScore" /> | |
| 45 </section> | |
| 46 </tools> |