Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/Divide.xml @ 15:3e477c7e0e73 draft
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
| author | timpalpant |
|---|---|
| date | Sat, 09 Jun 2012 16:03:59 -0400 |
| parents | 81d5b81fb3c2 |
| children |
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| 14:f58706d4d421 | 15:3e477c7e0e73 |
|---|---|
| 1 <tool id="Divide" name="Divide" version="1.0.0"> | 1 <tool id="WigDivide" name="Divide" version="1.1.0"> |
| 2 <description>two (Big)Wig files</description> | 2 <description>two (Big)Wig files</description> |
| 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Divide -n $dividend -d $divisor -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Divide -n $dividend -d $divisor -o $output</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param format="bigwig,wig" name="dividend" type="data" label="File 1 (dividend)" /> | 5 <param format="bigwig,wig" name="dividend" type="data" label="File 1 (dividend)" /> |
| 6 <param format="bigwig,wig" name="divisor" type="data" label="File 2 (divisor)" /> | 6 <param format="bigwig,wig" name="divisor" type="data" label="File 2 (divisor)" /> |
| 7 </inputs> | 7 </inputs> |
| 8 <outputs> | 8 <outputs> |
| 9 <data format="wig" name="output" metadata_source="dividend" /> | 9 <data format="wig" name="output" metadata_source="dividend" /> |
| 10 </outputs> | 10 </outputs> |
| 11 <tests> | 11 <tests> |
| 12 <!--<test> | 12 <test> |
| 13 <param name="dividend" value="wigmath.input1"/> | 13 <param name="dividend" value="wigmath1.wig"/> |
| 14 <param name="divisor" value="wigmath.input2"/> | 14 <param name="divisor" value="wigmath2.wig"/> |
| 15 <param name="dbkey" value="sacCer2"/> | 15 <output name="output" file="divide1.wig"/> |
| 16 <output name="output" file="divide.output"/> | |
| 17 </test> | 16 </test> |
| 18 <test> | 17 <test> |
| 19 <param name="dividend" value="wigmath.input1.bw"/> | 18 <param name="dividend" value="wigmath1.wig"/> |
| 20 <param name="divisor" value="wigmath.input2"/> | 19 <param name="divisor" value="wigmath3.bw"/> |
| 21 <param name="dbkey" value="sacCer2"/> | 20 <output name="output" file="divide2.wig"/> |
| 22 <output name="output" file="divide.output"/> | |
| 23 </test> | 21 </test> |
| 24 <test> | 22 <test> |
| 25 <param name="dividend" value="wigmath.input1"/> | 23 <param name="dividend" value="wigmath3.bw"/> |
| 26 <param name="divisor" value="wigmath.input2.bw"/> | 24 <param name="divisor" value="wigmath2.bw"/> |
| 27 <param name="dbkey" value="sacCer2"/> | 25 <output name="output" file="divide3.wig"/> |
| 28 <output name="output" file="divide.output"/> | |
| 29 </test> | 26 </test> |
| 30 <test> | |
| 31 <param name="dividend" value="wigmath.input1.bw"/> | |
| 32 <param name="divisor" value="wigmath.input2.bw"/> | |
| 33 <param name="dbkey" value="sacCer2"/> | |
| 34 <output name="output" file="divide.output"/> | |
| 35 </test>--> | |
| 36 </tests> | 27 </tests> |
| 37 | 28 |
| 38 <help> | 29 <help> |
| 39 | 30 |
| 40 .. class:: infomark | 31 .. class:: infomark |