Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/PercusDecomposition.xml @ 15:3e477c7e0e73 draft
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
| author | timpalpant |
|---|---|
| date | Sat, 09 Jun 2012 16:03:59 -0400 |
| parents | 81d5b81fb3c2 |
| children |
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| 14:f58706d4d421 | 15:3e477c7e0e73 |
|---|---|
| 1 <tool id="PercusDecomposition" name="Derive Percus energy landscape" version="1.0.0"> | 1 <tool id="PercusDecomposition" name="Derive Percus energy landscape" version="1.1.0"> |
| 2 <description>from occupancy data</description> | 2 <description>from occupancy data</description> |
| 3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.PercusDecomposition -d $dyads -n $N -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.PercusDecomposition -d $dyads -n $N -o $output</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts (smoothed)" /> | 5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts (smoothed)" /> |
| 6 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" /> | 6 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" /> |