Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/ZScore.xml @ 15:3e477c7e0e73 draft
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
| author | timpalpant |
|---|---|
| date | Sat, 09 Jun 2012 16:03:59 -0400 |
| parents | eb53be9a09f4 |
| children |
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| 14:f58706d4d421 | 15:3e477c7e0e73 |
|---|---|
| 1 <tool id="WigZScore" name="Z-Score" version="1.0.0"> | 1 <tool id="WigZScore" name="Z-Score" version="1.2.0"> |
| 2 <description>a (Big)Wig file</description> | 2 <description>a (Big)Wig file</description> |
| 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.ZScore -i $input -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.ZScore -i $input $chr -o $output</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param format="bigwig,wig" name="input" type="data" label="Z-score the data in" /> | 5 <param format="bigwig,wig" name="input" type="data" label="Z-score the data in" /> |
| 6 <param name="chr" type="boolean" checked="false" truevalue="-c" falsevalue="" label="Z-score chromosomes individually" /> | |
| 6 </inputs> | 7 </inputs> |
| 7 <outputs> | 8 <outputs> |
| 8 <data format="wig" name="output" metadata_source="input" /> | 9 <data format="wig" name="output" metadata_source="input" /> |
| 9 </outputs> | 10 </outputs> |
| 10 <tests> | 11 <tests> |