comparison galaxy-conf/MovingAverageSmooth.xml @ 4:4b32ed5d4a1b

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4:4b32ed5d4a1b

<tool id="GaussianSmoother" name="Gaussian smooth" version="1.0.0">
  <description>a (Big)Wig file</description>
  <command interpreter="sh">galaxyToolRunner.sh wigmath.MovingAverageSmooth -i $input -w $W -o $output</command>
  <inputs>
      <param name="input" type="data" format="bigwig,wig" label="Smooth the data in" />
      <param name="W" type="integer" value="20" optional="true" label="Width of the moving average in base pairs" />
  </inputs>
  <outputs>
      <data format="wig" name="output" metadata_source="input" />
  </outputs>
  <tests>
    <!--<test>
	    <param name="input" value="test.wig"/>
	    <param name="dbkey" value="sacCer2"/>
	    <param name="S" value="20"/>
	    <param name="W" value="3"/>
	    <output name="output" file="smoother.output1"/>
	  </test>
	  <test>
	    <param name="input" value="test.bw"/>
	    <param name="dbkey" value="sacCer2"/>
	    <param name="S" value="20"/>
	    <param name="W" value="3"/>
	    <output name="output" file="smoother.output1"/>
	  </test>
	  <test>
	    <param name="input" value="test.wig"/>
	    <param name="dbkey" value="sacCer2"/>
	    <param name="S" value="10"/>
	    <param name="W" value="2"/>
	    <output name="output" file="smoother.output2"/>
	  </test>
	  <test>
	    <param name="input" value="test.bw"/>
	    <param name="dbkey" value="sacCer2"/>
	    <param name="S" value="10"/>
	    <param name="W" value="2"/>
	    <output name="output" file="smoother.output2"/>
	  </test>
	  <test>
	    <param name="input" value="test.wig"/>
	    <param name="dbkey" value="sacCer2"/>
	    <param name="S" value="50"/>
	    <param name="W" value="1"/>
	    <output name="output" file="smoother.output3"/>
	  </test>
	  <test>
	    <param name="input" value="test.bw"/>
	    <param name="dbkey" value="sacCer2"/>
	    <param name="S" value="5"/>
	    <param name="W" value="1"/>
	    <output name="output" file="smoother.output3"/>
	  </test>-->
  </tests>
  
<help>
</help>
</tool>